PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1331
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 264aa    MW: 29649.3 Da    PI: 6.6342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1331genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20118168255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g
  Gh_A05G1331 118 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAAMAYDKAALRIRG 168
                  7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32117177IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-24118177IPR016177DNA-binding domain
SMARTSM003806.5E-39118182IPR001471AP2/ERF domain
CDDcd000182.19E-29118176No hitNo description
PfamPF008474.5E-15118168IPR001471AP2/ERF domain
PROSITE profilePS5103224.065118176IPR001471AP2/ERF domain
PRINTSPR003672.0E-11119130IPR001471AP2/ERF domain
PRINTSPR003672.0E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAVESSHHAA ADESILENVW ANFIGGEEGD KARKPSFGSW EELPSLDGRD GSMEILQRLP  60
SLGRWISMGA DAWEDLLHGI IPPGNIPQSC NNVTANDIIS TRGHKANSMR VEKLATRHYR  120
GVRRRPWGKY AAEIRDSSRK GARVWLGTFD TAEEAAMAYD KAALRIRGPK ANLNFPLHTV  180
AKAMGIDDTK TNFNRFLSAT NGQGTKDFTD HRKRECRAWE QNSEVVMVEQ PQLKRMASIE  240
ECGYDVFWFQ DLGSDYLESL LSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27117179466ATERF1
3gcc_A5e-27117179466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822121e-63JX582212.1 Gossypium hirsutum clone NBRI_GE15002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730799.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A1U8MYZ80.0A0A1U8MYZ8_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGGorai.009G165400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-37ERF family protein