PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1126
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 385aa    MW: 42799.4 Da    PI: 6.656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1126genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++v+ +G g+W+++++  g+ R++k+c++rw +yl
      Gh_A05G1126 17 RGLWSPEEDEKLINYVTTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding48.32.4e-1570112145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
      Gh_A05G1126  70 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-27967IPR009057Homeodomain-like
PROSITE profilePS5129425.1021268IPR017930Myb domain
SuperFamilySSF466891.05E-2914111IPR009057Homeodomain-like
SMARTSM007171.1E-131666IPR001005SANT/Myb domain
PfamPF002493.2E-161764IPR001005SANT/Myb domain
CDDcd001673.62E-122064No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2568119IPR009057Homeodomain-like
PROSITE profilePS5129419.26369119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002493.7E-1470113IPR001005SANT/Myb domain
CDDcd001673.26E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMGHGHHSCC NKQKVKRGLW SPEEDEKLIN YVTTYGHGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSPQEAAL IIELHSILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKFI  120
SHEAPALASF ADVHNFKSPE EAVDFVSLNV NPSLILSDQR DQLYLAPSLL QSFAQHHADF  180
KSNPSGDNVD FIHHHFPLTP MLPPPLSSAS SLDPSWPLPF VAPQHDIDHH QDKKHHVPVF  240
SNEVVHDIFD EKLMNSTAAV NLYDHPLMAA QTVPKLCEIL EGDLCNMPLT SVSLENIDPL  300
GSRLSTCLPI SAGSSYAHDM VVATNQMEFI DTIITSMPSA SSSSSSSLSA LSSGQYITNP  360
NLPSGGWDPW HDPFTFSYMI GVRFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31171187107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.11550.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780011e-107JX578001.1 Gossypium hirsutum clone NBRI_GE9934 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749647.10.0PREDICTED: transcription factor MYB26-like
RefseqXP_016749648.10.0PREDICTED: transcription factor MYB26-like
TrEMBLA0A1U8PH730.0A0A1U8PH73_GOSHI; transcription factor MYB26-like
STRINGGorai.009G142200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.28e-80myb domain protein 26