PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G1037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 29513.1 Da PI: 10.3522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 145 | 194 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grW AeIrd + g r r++lg+f+taeeAa+a++aa+++l+g Gh_A05G1037 145 SYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDAAARRLRG 194 69*******.**********55...2.59************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.47E-15 | 144 | 203 | No hit | No description |
Pfam | PF00847 | 5.0E-14 | 145 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 145 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 145 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 145 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 145 | 202 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 146 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 168 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVDFRSLQAV PFFDTPQTSE ASWPCNRPAG SSQIPSCSSM IAPTYFYKRN YPPFCTEFAG 60 VLSLDGFDKN RENAVETTIE SGPEMPPVLD GIAVVVGQHV LFGNKTNPPS TNRSSDGDRP 120 GFISVSQRFG ANKRELGSSV SVQKSYRGVR KRPWGRWSAE IRDRVGRCRH WLGTFDTAEE 180 AARAYDAAAR RLRGSKAKTN FEIPSVLPAL ASPSTSSSSS EAKKVKGKAK TVRKCAVVTS 240 VDQLFSSDSF GGNEGKGKSG LVPTASKATT SNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 144 | 203 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-16 | 146 | 201 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016752973.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF084-like | ||||
TrEMBL | A0A1U8PRK8 | 0.0 | A0A1U8PRK8_GOSHI; ethylene-responsive transcription factor ERF084-like | ||||
TrEMBL | A0A2P5VX77 | 0.0 | A0A2P5VX77_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G125700.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-25 | ERF family protein |