PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0912

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 796aa MW: 87969 Da PI: 6.7731

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0912	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	600	637	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Gh_A05G0912 600 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 637 664459******************************87 PP
2	BELL	103.7	1.3e-33	460	529	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q+kkakL+ + eeV++rYk y++q+q+v+ssFe vaglg+a pY+ lAlk+++r FrcL++ai +qi Gh_A05G0912 460 HEYQQKKAKLVYMHEEVCRRYKLYHQQMQMVVSSFESVAGLGAAIPYVPLALKTLARDFRCLRNAILDQI 529 799*****************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-46	393	527	IPR006563	POX domain
Pfam	PF07526	1.3E-40	398	525	IPR006563	POX domain
PROSITE profile	PS50071	12.212	578	641	IPR001356	Homeobox domain
SMART	SM00389	4.1E-8	581	645	IPR001356	Homeobox domain
CDD	cd00086	1.01E-11	581	642	No hit	No description
SuperFamily	SSF46689	7.27E-17	582	648	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-27	584	645	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	598	637	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MDMSKFRPES HVAQQRLRDK LRVQQSSKLV QQLEDFPNNL EDGCSSVLPA LNPGLAHVRN 60 DNLLYDPDVF SSDIIHVSSN SSVLPSQRDT MLHQEMQTAP ENRQLLAEES SFPGMSQSNL 120 SKFDGSSKVS GDPHDCGNWR GVDSQHNCDW MVGYASGLAV RESNQDHRFV GEVMSNNATI 180 LNSAYQDVQS THPNPGSEIY SLERNLHFVS PSLYQNSLQD VVTTAQGLEV GSHEPQNVRE 240 AAKGSRTDYC GNEANPLHFG NAGTWMNTPL GEHSQQWGAE LGFLASKSSV ELGAAASDAT 300 THGLSLSLSS HPTPKICGAD PVQFTGNQYG SDGFLSKPGE FKELRDSKTS NMGHFFSMQK 360 SSSTCKADGK SLQDAGGTSA YVHRQTIPLG PFTGYATILK NSRFLKPAQE LLDEFCHISN 420 SKPVKVCDTS EGIPGEVSAC KESNSGASAT FYSSNESCKH EYQQKKAKLV YMHEEVCRRY 480 KLYHQQMQMV VSSFESVAGL GAAIPYVPLA LKTLARDFRC LRNAILDQIK HVSRALGEDL 540 LSPTTGTSGS KGDINMSRLK CFGQKSGGVN MGFLEPQQHS WRPQRGLPER SVAILRAWLF 600 EHFLHPYPTD TDKHMLATQT GLSRNQVSNW FINARVRVWK PMVEEIHMLE SKCLAEGNQN 660 SSKSEGKSTS EGRISWPNDG QSINRSCVNA LSDKQLACAD MLVADAHDLE HWNHEKRSSM 720 DFHIPTSMEG SLMGFAPYQQ SRLENGGLGA VSLTLGLMHG VESAQQQQRQ QQQQYQQQEH 780 HSRRQFGGHL IHDFAG

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MDMSKFRPES HVAQQRLRDK LRVQQSSKLV QQLEDFPNNL EDGCSSVLPA LNPGLAHVRN  60
DNLLYDPDVF SSDIIHVSSN SSVLPSQRDT MLHQEMQTAP ENRQLLAEES SFPGMSQSNL  120
SKFDGSSKVS GDPHDCGNWR GVDSQHNCDW MVGYASGLAV RESNQDHRFV GEVMSNNATI  180
LNSAYQDVQS THPNPGSEIY SLERNLHFVS PSLYQNSLQD VVTTAQGLEV GSHEPQNVRE  240
AAKGSRTDYC GNEANPLHFG NAGTWMNTPL GEHSQQWGAE LGFLASKSSV ELGAAASDAT  300
THGLSLSLSS HPTPKICGAD PVQFTGNQYG SDGFLSKPGE FKELRDSKTS NMGHFFSMQK  360
SSSTCKADGK SLQDAGGTSA YVHRQTIPLG PFTGYATILK NSRFLKPAQE LLDEFCHISN  420
SKPVKVCDTS EGIPGEVSAC KESNSGASAT FYSSNESCKH EYQQKKAKLV YMHEEVCRRY  480
KLYHQQMQMV VSSFESVAGL GAAIPYVPLA LKTLARDFRC LRNAILDQIK HVSRALGEDL  540
LSPTTGTSGS KGDINMSRLK CFGQKSGGVN MGFLEPQQHS WRPQRGLPER SVAILRAWLF  600
EHFLHPYPTD TDKHMLATQT GLSRNQVSNW FINARVRVWK PMVEEIHMLE SKCLAEGNQN  660
SSKSEGKSTS EGRISWPNDG QSINRSCVNA LSDKQLACAD MLVADAHDLE HWNHEKRSSM  720
DFHIPTSMEG SLMGFAPYQQ SRLENGGLGA VSLTLGLMHG VESAQQQQRQ QQQQYQQQEH  780
HSRRQFGGHL IHDFAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-15	587	644	1	58	Homeobox protein Meis1
4xrs_B	1e-15	587	644	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11213	0.0	stem

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964539	1e-107	JX964539.1 Gossypium hirsutum clone NBRI_TRANS-808 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749864.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Refseq	XP_016749865.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
TrEMBL	A0A1U8PI33	0.0	A0A1U8PI33_GOSHI; BEL1-like homeodomain protein 2
STRING	Gorai.009G109300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14321	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	3e-87	BEL1-like homeodomain 8