PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0895
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 695aa    MW: 77305.8 Da    PI: 8.7018
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0895genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24111212199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + +++e
  Gh_A05G0895 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIARDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFL--RAENGE 204
                  89****************************997556555..8************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Gh_A05G0895 205 LCVGIRRA 212
                  ******97 PP
2Auxin_resp112.15.4e-37267350183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+  a+++++Fe+vY+Prast+eF+vk++ v++a++v+++  mRfkmafeted+s++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Gh_A05G0895 267 AVALAANGQPFEIVYYPRASTPEFCVKASAVRAAMRVPWCSLMRFKMAFETEDCSRISWfMGTVSSVHIADPLRWPNSPWRLLQ 350
                  577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-37104217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-29109214IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-22110211No hitNo description
PROSITE profilePS5086313.098111213IPR003340B3 DNA binding domain
SMARTSM010198.0E-23111213IPR003340B3 DNA binding domain
PfamPF023621.2E-21111212IPR003340B3 DNA binding domain
PfamPF065071.1E-30267350IPR010525Auxin response factor
PROSITE profilePS5174515.342583663IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MRKEAEKSLD PQLWHACAGS MVQIPPVNSK VFYFPQGHAE HSLYPVDFSS SPPIPALLLC  60
RVASVKFLAD AETDEVYAKI MLVPLPNPEP DLENDAVFGG GSDNVEKPAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPRL DYTADPPVQT VIARDVHGEI WKFRHIYRGT PRRHLLTTGW  180
SSFVNHKKLV AGDSIVFLRA ENGELCVGIR RAKRGNDTGA ESGLGNGNDV SPYGGFSGFL  240
KEDESKITRK RSPRGKGKVR AEAVVEAVAL AANGQPFEIV YYPRASTPEF CVKASAVRAA  300
MRVPWCSLMR FKMAFETEDC SRISWFMGTV SSVHIADPLR WPNSPWRLLQ VTWDEPDLLQ  360
NVERVSPWLV ELVPNMLPVH LSPFSTVTPR KKLRLPEHLD FPLVEQFPMP PFSGHPLRSS  420
NPLRCLSDNA PAGIQGARHA QFRLSSSDPH LNKLKSGLFP SGFQLFDPQP RVPNGISMTK  480
HTDSNNDNLL CLLTVGNSSP KKKSENGKRH QFLLFGQPIL TEQQLSHSCS TGVKTSVKNE  540
DKRKDSSNGS GSALENQLSP EKSFTTTLLW RQDYQTPEPG SATGHCKVFL ESEDVERTLD  600
LTVLGSYEEL YRRLANMFGR ERSEMLGHVL YRDATGAVKQ TGDEPFSTFM KTVKRLNIRM  660
DSRNDADGRS WLTGIRTAEN RLEGPNKRGP LSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-81937551391Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.185760.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4670650.0EF467065.1 Gossypium hirsutum auxin response factor 3 (ARF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750458.10.0PREDICTED: auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8PJH90.0A0A1U8PJH9_GOSHI; Auxin response factor
STRINGGorai.009G107800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]