PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 291aa MW: 31454.9 Da PI: 6.594 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00046 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Gh_A05G0721 114 YECKTCNRSFPSFQALGGHRASH 136 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.8E-13 | 113 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.06 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.24E-9 | 114 | 136 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.24E-9 | 192 | 219 | No hit | No description |
PROSITE profile | PS50157 | 9.536 | 197 | 224 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-10 | 197 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MQAQPDFEVS NIDHQALIMK GKRTKRQRSS SPFGVTVTSS SSSACGGGGG VAEEYNSISS 60 PVTSGEIYES TEEEEDMANC LIMLAQSDGP KRRSNIEEKQ EMVTATNKAE VYAYECKTCN 120 RSFPSFQALG GHRASHKKPK GATAYEKKPL VLAFKDHGVE DADQFNRESP AVLALQVGNN 180 YNNNKTNCHG NKGNKIHECS ICGSEFLSGQ ALGGHMRRHR AAASNQAAVS VDTTSIPIES 240 GNGDGNKPRN ILALDLNLPA PEDDLRDAKF QFGAPQQVIV FSTPALIDCH Y |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648224.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 5e-69 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A1U8JLI6 | 0.0 | A0A1U8JLI6_GOSHI; zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P5QSP4 | 0.0 | A0A2P5QSP4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G090200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5862 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-63 | C2H2 family protein |
Publications ? help Back to Top | |||
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