PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0608

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 282aa MW: 31421.2 Da PI: 5.1799

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0608	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59	1e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++aded+ +i+ +P l+ska elf+ +l r++ + + +t++ s ++++v+ ++fdfl +iv + Gh_A05G0608 6 DTRFPAARIKKIMQADEDIGKIAMAVPLLVSKALELFLQDLCDRTYEITTMKGAKTINSSHLKQCVQGFNVFDFLREIVGK 86 5789************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.03E-20	3	88	IPR009072	Histone-fold
Pfam	PF00808	1.3E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MKRKLDTRFP AARIKKIMQA DEDIGKIAMA VPLLVSKALE LFLQDLCDRT YEITTMKGAK 60 TINSSHLKQC VQGFNVFDFL REIVGKVPDL GGLDAAAEDC HVPKKRKVAD DDESKKSRMH 120 ESCHVTSSSR GRGRGRGRGQ GRGRQTAGRE TAAHCGKFED DPDISYFEEK HDLSLERHVP 180 DDVVESDESK KHNHAGKNIK TPVRNIDLNA DLDENGDLIT SIAAASPRTD DMPENSENRE 240 EYPGWSLCEI EKMAIDPIKL ADSNGGIDDE DYDEEVSARL LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGQGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750770.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1U8PHW5	0.0	A0A1U8PHW5_GOSHI; dr1-associated corepressor-like
STRING	Gorai.009G077100.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	7e-61	NF-YC family protein