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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A05G0591 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 341aa MW: 36219.1 Da PI: 8.5677 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A05G0591 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 205.5 | 1.5e-63 | 130 | 293 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklss.aes 96
s +a+CqdCGnqakkdC ++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s +++++s+t++s+ +++
Gh_A05G0591 130 SSGATCQDCGNQAKKDCRYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGAGlsgSTAGPKKPRLRTS-QTTTASHTSTSNaTTP 226
56789*********************************************9988877766555445667888888887755.5555555555551556 PP
DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++l+t s +P++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++
Gh_A05G0591 227 PRSLDTCSspqnaefkepFPAQVRATAVFKCVRVTAIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 293
78888888899******************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQVNGPN DPTALGVGVI PLLTTAPCLA 60
PHHAEDTDLL NNNDRSKFTG MQLWQNPNFS HYLKKSSSNP NNHNSSSMNL IQSSGGIGGT 120
ESGSGGSGSS SGATCQDCGN QAKKDCRYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180
LMTVGATAAG AGAGLSGSTA GPKKPRLRTS QTTTASHTST SNATTPPRSL DTCSSPQNAE 240
FKEPFPAQVR ATAVFKCVRV TAIEEGEDEF AYEAVVKIGG HVFKGLLYDQ GVDGFPNISQ 300
LHLSGRNGES SSSPVLDPSQ VYEATTGGGL LRGSNYGSAR N
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 4e-72 | Lateral root primordium (LRP) protein-related |
