PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0570
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 263aa    MW: 29647.8 Da    PI: 6.1543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0570genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.7e-1571123155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR+++N+ ++ Lr+llP a   + kKls  +++ +A +YI +Lq
  Gh_A05G0570  71 KKLNHNASERDRRKKVNNMYSSLRSLLPVA--DQTKKLSFPATVSHALKYIPELQ 123
                  6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.94870122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1771142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1471137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-1271127No hitNo description
SMARTSM003539.3E-1176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MCALAPFPTP NWPLVNPIGY EHNYMMYEGG SECLESFLQF PPSPQEGIPL ESLSPASNFT  60
QTSNSDPCIV KKLNHNASER DRRKKVNNMY SSLRSLLPVA DQTKKLSFPA TVSHALKYIP  120
ELQQQVERLV QKKEELLLRI SEQGGVKPCE EKEEARKRNN RKQGSCLGGV GVSINRLSDG  180
EVAIQISIRE VDKRSGLLSE MLQYLEQQGF LLLNASSFES FGGVVFYNIH LQMELETSRK  240
MGSEEALSER IFALCYNREE LGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5883331e-60JX588333.1 Gossypium hirsutum clone NBRI_GE22730 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753020.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8PPB20.0A0A1U8PPB2_GOSHI; transcription factor ORG2-like
STRINGGorai.009G073100.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-52bHLH family protein