PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0516
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 335aa    MW: 37024.2 Da    PI: 6.6614
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0516genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12.1e-09436436
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 + C+ +++  ++lfC+ ++ +lC +C +++H  
  Gh_A05G0516  4 KLCDSCKSATATLFCRADSAFLCSNCDSKIHAA 36
                 68*****************************55 PP
2zf-B_box24.55.6e-084690341
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  ++C+ +e+ +++  C+ +   lC +C   +H+       H++ p
  Gh_A05G0516 46 VWVCEVCEQAPAHVTCKADAAALCITCDRDIHSAnplarrHERLP 90
                 689*****************************6688888898877 PP
3CCT69.49.4e-24272315144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Gh_A05G0516 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 315
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.779148IPR000315B-box-type zinc finger
PfamPF006431.2E-6443IPR000315B-box-type zinc finger
CDDcd000211.67E-9548No hitNo description
PROSITE profilePS5011910.7084491IPR000315B-box-type zinc finger
PfamPF006431.7E-64691IPR000315B-box-type zinc finger
CDDcd000213.29E-84791No hitNo description
SMARTSM003361.1E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658272314IPR010402CCT domain
PfamPF062031.5E-17272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCSNCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCI TCDRDIHSAN PLARRHERLP VTPFYDSVNS VPAVKPNGVV NFLEERYFSD  120
VDGDADVSRE EAEAASWLLP NPNHKAVDSP DVNSGQYVFS EMDPYLDLDY GHGDPKMDAQ  180
EQNSSGTDGV VPVQSKNVQA PSANDHCFDL DFTGSKSFSY GYNPNFISHS VSSSSLDVGV  240
VPDGSTMTDI SNPYGRGPQS THQTVQLSPA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AEMRPRIKGR FAKRTDIEVE VDRSNMYGFG VVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104720.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6958540.0HQ695854.1 Gossypium hirsutum CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687190.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-152COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1Z2THZ90.0A0A1Z2THZ9_GOSHI; CONSTANS-like protein
STRINGGorai.009G065600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-149CONSTANS-like 4
Publications ? help Back to Top
  1. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]