PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0473
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 662aa    MW: 72752.1 Da    PI: 5.7817
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0473genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.88.6e-22202258155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkS...HLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+v+ Lt+e+v+     LQk+Rl
  Gh_A05G0473 202 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILELMDVENLTRENVAIpflWLQKFRL 258
                  79*******************.************************9644479****8 PP
2Response_reg77.45.2e-26201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ + ll+++l+k +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ +++ + +  Ga 
   Gh_A05G0473  20 VLAVDDDPTCLLLLETLLTKCKY-NVTTTSQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGITHGAC 114
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
   Gh_A05G0473 115 DYLLKPVRIEELQN 128
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-3517141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.4E-4217141No hitNo description
SMARTSM004482.4E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.45219134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.74E-2421134No hitNo description
SuperFamilySSF466891.97E-13199262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-22200263IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17202258IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MRVGRVISDE NDSFPVGMRV LAVDDDPTCL LLLETLLTKC KYNVTTTSQA ITALKMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP  120
VRIEELQNIW QHVIRRKKFD RKDRNGSGSQ DKPYIDSSEA AGLGNVDQNG KFNKKRKDQN  180
EDEDEERDEN GHDNEDLSTQ KKPRVVWSVE LHRKFVAAVN QLGIEKAVPK KILELMDVEN  240
LTRENVAIPF LWLQKFRLYL KRISCVANQQ ANMAAALGSV DSTHLRMGTM NGLGNFHTLA  300
GPDQIHNAAF RSFQHSGVLR RLNTPSGVGI SGLPSSGLVQ LSPVQNLGNT STNQSKLQSF  360
VIPGNHNANI LQGMPMSLEF DQLQNNRAAS HVGQFPSVDN TTVLPVSSIS ASLIDAGCSS  420
SPLLGVTSNS LLLEGSSQLP TLHARNLRDS VSGFPNRSTL SDFTSIAPAS NQLHGSKADI  480
QDQASPISCN AGKIISSAPQ DWNAPKKDAP YQSNVPSCSI NSLRAVNGDM AWLGQCLDQN  540
NPIFNRNVGF DFVDPLSIKF SEGENLAMEP SVIEKEGYLM VQPSRQGSYI PDNEDENFAM  600
EPSVIEKEGY LIVQPRRQGS YIPGNLGSLE DLASAITKQD HDKGKPTDGD FGYNDYSLRT  660
CI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21198264164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750436.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1U8PGU70.0A0A1U8PGU7_GOSHI; two-component response regulator ARR12-like
STRINGGorai.009G061000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-134response regulator 12