PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0463
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 426aa    MW: 47057.5 Da    PI: 6.3664
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0463genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.9e-073754082154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gh_A05G0463 375 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 408
                  469*****************************87 PP
2ELK28.82.8e-10329350122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Gh_A05G0463 329 ELKHELKQGYKEKIVDIREEIL 350
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-19160204IPR005540KNOX1
PfamPF037908.2E-17162203IPR005540KNOX1
SMARTSM012562.5E-29216271IPR005541KNOX2
PfamPF037912.7E-21220270IPR005541KNOX2
PROSITE profilePS512139.969329349IPR005539ELK domain
PfamPF037899.9E-7329350IPR005539ELK domain
SMARTSM011886.1E-4329350IPR005539ELK domain
PROSITE profilePS5007111.451349412IPR001356Homeobox domain
SMARTSM003893.1E-10351416IPR001356Homeobox domain
SuperFamilySSF466891.45E-15352415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-25356413IPR009057Homeodomain-like
CDDcd000864.32E-11363413No hitNo description
PfamPF059209.8E-18369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAFHPNHLSQ DLPLHHFTFQ QQQTNQLPET TAPNWLNTAL LRSQQESQPP QPHAHFSDPN  60
FLNLHTATTA SESTSASQAP NQWLSPSSSS LLQRNHSGVV DDVAAVAAAG GGVGRETMVA  120
VEPGELKSSN SESMNNNNKS EGVAVESGGG GDGAVNWQNA RYKAEVLAHP LYEQLLSAHV  180
ACLRIATPVD QLPRIDAQLA QSQHVVAKYS ALGGGAQGLV GDDKELDQFM THYVLLLCSF  240
KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GRVSPGEGTG ATMSDDDEEQ IDSDANLFDG  300
SMEGPDSLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG  360
GTTSVLKAWW QSHSKWPYPT EEDKAKLVQE TGLQLKQINN WFINQRKRNW HSNPSTSTVL  420
KNKRKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405425RKRNWHSNPSTSTVLKNKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689476.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_016689477.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_017627618.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5SMT60.0A0A2P5SMT6_GOSBA; Uncharacterized protein
STRINGGorai.009G060200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]