PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 1026aa MW: 112701 Da PI: 4.7324 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Gh_A05G0383 39 KGQWTAEEDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65 | 1.4e-20 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l Gh_A05G0383 91 KGPWSKEEDELIIELVNKFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.1 | 3e-16 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Gh_A05G0383 143 KQAWTQEEELALIRAHQIFGNR-WAELSKFLP-GRTDNAIKNHWN 185 799*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.426 | 34 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-16 | 35 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 41 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.05E-14 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 33.416 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-32 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-19 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-19 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.13E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-28 | 103 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.4 | 142 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-16 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-12 | 145 | 185 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 145 | 192 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1026 aa Download sequence Send to blast |
MESDRTVSTP SVGLSISDDA QRMRALHGRT TGPTRRSTKG QWTAEEDEIL RKAVQHFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPS INKQAWTQEE ELALIRAHQI FGNRWAELSK FLPGRTDNAI 180 KNHWNSSIKK KLDSYIASGL LEQFQFSLLA NQSQPTPSSY STIPSNVDDS ASKCRTETED 240 ISECSQESAM VSCSQSTSDL AKAAVHTREQ FYMTEKLGVA KEKNSSPAPC SEEYYPSLED 300 VNFSMPEISS EGNSTGGNYQ FGLQDLPNIS SLDLGKESSG LPNNCLETSE GCEVMNIAFQ 360 SSVGLNAPVS FINMVTTSDK PEQTLIPDDE CCSVLFSENF TQGSNMVELG GFTNASLSQA 420 SGMQITETGR IPASQSNCLS RSEVLPSSQA FVSPSRLAVE DGTLTFGGES CPLNGQPFGT 480 QDQEFTMNTH DGFIYTIDDH TDSTDLQEQS YLDKDSRKLV PVNTFGLESN VAQSCPAEDD 540 KPTLPAEQDF CGLCYEPPRF LSLDIPFFNC DLIPSGSDMQ QEYSPLGIRQ LMMSTNCISP 600 FRLWDSPSRD NSPDVVLKSA AKTFTGTPSI LKKRHRDLLS PLSERQSEKK LGTDMASNLT 660 KGFSRLDVMF DESGTGNTTQ LSPSEHITNS SVSIKEKENI SQALDEEYDN GGVHAQPLED 720 ETPKGSDGTN SLGNIEKGVC EIDTKDKTDI DASYRTVQRP PAVLVEHDIN DILLFSPDDV 780 GLKAGLPLRF SSMRTPKNQY HKSLGAISNQ GLASECLSGN ACIIVSSPTL KIKKSEDPSI 840 ADTTVQFSSS SATLENSVDN TGSNAAIENY NIFGGTPFKR SIESPSAWKS PWFINSFVPG 900 PRIDTDITIE DIGYLMTPAE RSYDAIGLMK QLSEHGAAAY ADALEVLGNE TPQSIIKGRG 960 SNNSNNIDKE NNQLENHSHL ASNIMVERRI LDFSECGTPG KGAENGKSST AMSYSSPSSY 1020 LLKGLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-72 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-72 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19601 | 0.0 | boll| ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642331.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A0B0NXX8 | 0.0 | A0A0B0NXX8_GOSAR; Myb-related 3R-1-like protein | ||||
STRING | Gorai.009G051000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |