PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0364

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 776aa MW: 85675.2 Da PI: 6.2876

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0364	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Gh_A05G0364 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP
2	START	161	8.7e-51	124	308	26	205
EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TT CS START 26 esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlga 120 ++++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++++v+s+g g+++l +++l+a+++l+p Rdf+ +Ry+ +++ Gh_A05G0364 124 TQNPGPDSIGIVAISHGRSGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINVLSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVMED 220 78999***************************.8888888888************************************************* PP S-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 121 gdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 g++v++++S++++q+ p+ +++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ ++kt++a+l+++++ Gh_A05G0364 221 GSLVVCERSLNNTQNGPSmppAANFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 308 ************99999************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.872	15	79	IPR001356	Homeobox domain
SMART	SM00389	5.3E-16	17	83	IPR001356	Homeobox domain
CDD	cd00086	4.95E-17	20	80	No hit	No description
SuperFamily	SSF46689	5.13E-17	20	83	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-19	22	78	IPR009057	Homeodomain-like
CDD	cd14686	1.05E-6	72	111	No hit	No description
SMART	SM00234	1.8E-33	93	309	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	9.1E-24	117	305	IPR023393	START-like domain
SuperFamily	SSF55961	1.17E-33	122	311	No hit	No description
Pfam	PF01852	5.4E-48	124	308	IPR002913	START domain
CDD	cd08875	3.26E-66	128	309	No hit	No description
PROSITE profile	PS50848	22.619	145	318	IPR002913	START domain
Pfam	PF08670	1.1E-49	634	775	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MMAVTSSCKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQQTQNPGPD SIGIVAISHG RSGVAARACG LVGLDPTRVA EILKDRPSWY RDCRAVDVIN 180 VLSTGNGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVMED GSLVVCERSL NNTQNGPSMP 240 PAANFVRAEL LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STLLAQKTTM 300 AALRHLRQIS QEISQPNVTG WGRRPAALRA LSQKLSKGFN EAVNGFADEG WSMLESDGVD 360 DVTLLVNSSP SKMMGINLSY GNGFPSMGNA ILCAKASMLL QNVPPAILLR FLREHRSEWA 420 DSGIDAYSAA AVKAGPCGLP VARGGSFGGQ VILPLAHTIE HEEFMEVIKL ENMGHYREDM 480 IMPGDIFLLQ LCSGVDENAV GACAELIFAP IDASFSDDAP IIPSGFRIIP LDSGMDASSP 540 NRTLDLASTL EVGAAGNRST GDNSGRNGST KSVMTIAFQF VYEIHLQENV ATMARQYVRS 600 IIASVQRVAL ALSPSNFGSH AGFRTPPGTP EAQTLARWIC QSYRCYLGVE LLEYEGSESI 660 LKTLWHHTDA VLCCSLKALP VFTFANQAGL DMLETTLVAL QDISLEKIFD DNGRKALFAE 720 FPQVMQQQGF MCLQGGICLS SMGRPISYER AVAWKVVNDE ENAHCICFMF VNWSFV

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MMAVTSSCKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNPGPD SIGIVAISHG RSGVAARACG LVGLDPTRVA EILKDRPSWY RDCRAVDVIN  180
VLSTGNGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVMED GSLVVCERSL NNTQNGPSMP  240
PAANFVRAEL LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STLLAQKTTM  300
AALRHLRQIS QEISQPNVTG WGRRPAALRA LSQKLSKGFN EAVNGFADEG WSMLESDGVD  360
DVTLLVNSSP SKMMGINLSY GNGFPSMGNA ILCAKASMLL QNVPPAILLR FLREHRSEWA  420
DSGIDAYSAA AVKAGPCGLP VARGGSFGGQ VILPLAHTIE HEEFMEVIKL ENMGHYREDM  480
IMPGDIFLLQ LCSGVDENAV GACAELIFAP IDASFSDDAP IIPSGFRIIP LDSGMDASSP  540
NRTLDLASTL EVGAAGNRST GDNSGRNGST KSVMTIAFQF VYEIHLQENV ATMARQYVRS  600
IIASVQRVAL ALSPSNFGSH AGFRTPPGTP EAQTLARWIC QSYRCYLGVE LLEYEGSESI  660
LKTLWHHTDA VLCCSLKALP VFTFANQAGL DMLETTLVAL QDISLEKIFD DNGRKALFAE  720
FPQVMQQQGF MCLQGGICLS SMGRPISYER AVAWKVVNDE ENAHCICFMF VNWSFV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22231	0.0	boll\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614652.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-8-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A0D2TJN3	0.0	A0A0D2TJN3_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8N0W4	0.0	A0A1U8N0W4_GOSHI; homeobox-leucine zipper protein ATHB-8-like isoform X1
STRING	Gorai.009G049100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]