PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0268

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 502aa MW: 53967.3 Da PI: 4.7672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0268	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	277	322	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka+iL + + Y+k Lq Gh_A05G0268 277 HSIAERLRREKIAERMKNLQELIPNS-----NKTDKASILDEIIGYVKFLQ 322 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	270	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.08E-12	270	326	No hit	No description
PROSITE profile	PS50888	16.787	272	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	274	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-8	277	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-13	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MDDYLDQYFS SSSSSDVNVK ERSYWVHNEP DQPNEVFPSS RFNSIECLAA QNTPPVVHNR 60 GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLDTDV HSSGSLSLVS 120 SNDVPVVGDM IPSLSFNERG RMISNGGDSS EFLRSFTGLE TLSPIPQLWR LQPYDSVSSL 180 PTLVGQTKVD DEGNTNRFIE IDEILQPENL SASINAKGQQ DMQNSFYSSF PADHHITKTM 240 IGLPSLVQGA SPNLNNGSDR TVKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELIP 300 NSNKTDKASI LDEIIGYVKF LQLQVQVLSM SRLGAAAAVV PLITDGRAEG SNGLSLAPLA 360 GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS 420 SSVPASDESK KLGFTNSTLI NNTCSSSSSS SSNSSGSLPG VGIPNINADG NFMTGMLGSD 480 IMAKGCTGTF KQEELKTLCT AK

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MDDYLDQYFS SSSSSDVNVK ERSYWVHNEP DQPNEVFPSS RFNSIECLAA QNTPPVVHNR  60
GSGCSVEHGL LYGEGGLQMN GENCSGNSSQ EMMNGSFELR NLGLQLDTDV HSSGSLSLVS  120
SNDVPVVGDM IPSLSFNERG RMISNGGDSS EFLRSFTGLE TLSPIPQLWR LQPYDSVSSL  180
PTLVGQTKVD DEGNTNRFIE IDEILQPENL SASINAKGQQ DMQNSFYSSF PADHHITKTM  240
IGLPSLVQGA SPNLNNGSDR TVKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELIP  300
NSNKTDKASI LDEIIGYVKF LQLQVQVLSM SRLGAAAAVV PLITDGRAEG SNGLSLAPLA  360
GQGVDFSPSP DQVVFEQEVV KLMESNMTMA MQYLQSKGFC LMPVALAAAI SNVKSSTSSS  420
SSVPASDESK KLGFTNSTLI NNTCSSSSSS SSNSSGSLPG VGIPNINADG NFMTGMLGSD  480
IMAKGCTGTF KQEELKTLCT AK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615324	0.0	JX615324.1 Gossypium hirsutum clone NBRI_GE59251 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750201.1	0.0	PREDICTED: uncharacterized protein LOC107958820
TrEMBL	A0A1U8PG46	0.0	A0A1U8PG46_GOSHI; uncharacterized protein LOC107958820
STRING	Gorai.009G038500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16266	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-55	LJRHL1-like 3