PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0264
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1105aa    MW: 123335 Da    PI: 6.7122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0264genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.4e-22126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +d   + +l
  Gh_A05G0264 126 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSMQPPA-QELVARDLHENAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--AKSQL 220
                  99*****************************9445444.48************************************************54..45556 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Gh_A05G0264 221 LLGLRRA 227
                  8888886 PP
2Auxin_resp123.21.8e-40252334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa++ s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++Gtv+g+sdldpvrW+nS+Wr+L+
  Gh_A05G0264 252 AAHAAANFSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 334
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-40118241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.71E-18125226No hitNo description
PfamPF023622.9E-20126227IPR003340B3 DNA binding domain
SMARTSM010192.5E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956126228IPR003340B3 DNA binding domain
PfamPF065073.5E-35252334IPR010525Auxin response factor
PfamPF023091.8E-99751064IPR033389AUX/IAA domain
PROSITE profilePS5174525.6749781071IPR000270PB1 domain
SuperFamilySSF542779.81E-89931056No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MKAPPTGFLA NPAEGDRKSI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE  60
TDFIPCYPNL PSKLICVLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPSLDFSMQ PPAQELVARD LHENAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDAKSQL LLGLRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANFS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTVTGISDL DPVRWKNSQW RNLQVGWDES TAGERPRRVS IWEIEPVVSP  360
FFICPPPFFR PRFPKQPGMP DDDSDVENAF KRATPWLGDD FGMRGTPSSI FPGLSLVQWM  420
NMQQSNQFPA AQSGFFPSTV SSNLLHSNLS IDDPSKLLNF QAPVLPAPNM QFNKANPNQV  480
NQLPQAPTTW SQQILQTPVN QHQQQQPQQQ LQQQQPQQPQ QQPQPQSHLL HQQQPQPQPS  540
PKQQQHIHQE QRQQPQQQQP LQQQPTLPPQ VTNGIVAPNQ ISNQNLHQPA VYSHLQQQQL  600
LTSNSLSTQT TLSAHMTSYP LTSLPQDTRV QQQMEQQPNL MQRQQQQTQL QQSLSQRTQQ  660
QPQILQLSQQ GLSEQLQLQL LQKLQQQQQQ QSAQQLLSAA GSLLQPPMLQ QQQTHQQNQP  720
LQQLPLSQSQ VQPLGSNGFS TSMFVQPQQL SVHQSQSQSK QLMAMRSNSG LIDGDAPPST  780
LSSTNNCQVS PSNLINRSHH VPSILMTDPV VEPPSTLAQE LLSKPDIQIK HEPPTSRGLD  840
QSKYKSSVTD QLEASSSGTS YCLDAGTIQH NAALSFLEGD VQSHSRNNLP FTANIDGLAP  900
ETLLTREYDS QKDLQNMLSN YGGNPRDIDT ELSTAAISCQ SFGVPNIPFK TGCSNDVAIN  960
ETGVLNGGLW TNQTQRMRTY TKVQKRGSVG RSIDVTRYKG YDELRHDLVR MFGIEGQLED  1020
PQSSDWKLVY VDHENDILLV GDDPWEEFVS CVQSIKILSS AEVQQMSLDG NLGNVSVPNQ  1080
ACSGTENGNA WRGHYDDTSA VSFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248060.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750216.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1U8PG630.0A0A1U8PG63_GOSHI; Auxin response factor
STRINGGorai.009G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19