PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15664.3 Da PI: 8.1873 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+WvAe+r p++ r r++lg++ taeeAa+a++aa +l+g+ Gh_A05G0262 13 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTAEEAARAYDAAVFCLRGN 63 69*****99.*******999843...48************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 13 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-13 | 13 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-22 | 13 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.10E-27 | 13 | 72 | No hit | No description |
PRINTS | PR00367 | 7.7E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MVRPIGERDD GGRYKGVRMR KWGKWVAEVR QPNSRGRIWL GSYKTAEEAA RAYDAAVFCL 60 RGNSAKLNFP DNPPDIADAN ELTPDQIKEA AFRHARRDAG EEETEVAAAA AGNSYTECYF 120 GGGSVGDRSG RAYFPSPGVW TF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 12 | 70 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10919 | 1e-99 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964641 | 1e-49 | JX964641.1 Gossypium hirsutum clone NBRI_TRANS-910 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012445861.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Refseq | XP_016689790.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 4e-35 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A0D2UFW4 | 2e-98 | A0A0D2UFW4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JHM4 | 2e-98 | A0A1U8JHM4_GOSHI; ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A0A2P5W336 | 2e-98 | A0A2P5W336_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G037000.1 | 3e-99 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 8e-30 | ERF family protein |
Publications ? help Back to Top | |||
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