PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G0233

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 989aa MW: 107028 Da PI: 7.9576

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G0233	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.8e-06	479	499	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ Gh_A05G0233 479 YCRHYLK-GRCHEGEKCKFSHD 499 5****.***********7 PP
2	zf-CCCH	20	1.2e-06	533	553	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ++ G C++Gd C F+H Gh_A05G0233 533 PCINYTTKGSCSRGDDCLFSH 553 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	474	501	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0089	475	500	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-6	475	499	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.652	503	527	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	503	529	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.915	528	556	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.34	531	555	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-6	532	559	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-4	533	554	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MEEPQEAGVG DPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG 60 GNRGEQGGDD VREPGESIVS DSREPVNMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM 120 DDGQDLFDQN DMMVNSSMKG NGFQDGEIGR EQMLIADLEN IMKGNEDCHQ ISNCSAATLG 180 QNQGDNCSGI LLNNQDKHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE 240 VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGMCSPGPVV EKGEPEEGEI 300 FGESLLVNES IDILLDDAVV SEKKVDDAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND 360 GTSEFTFVNT NVAPIENKVT PGEFKGSETG QMVYELGMMQ RKECSGKIQK QIGHKNKVIE 420 TKSKKDVGLS NKKKQILTPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKVQT VLKPKTVTYC 480 RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG NDCPFDHQLS KYPCINYTTK 540 GSCSRGDDCL FSHKKPLEGD VASLSIAPDL PLKSSLQSDS DIGLNISRAP PKNANALSYS 600 LGGFSDKSKK QIVADSLSKT PNLACKVVNS LFVSKSSIAE SIQLNQGSLS QKMNESGRVG 660 SQSNQRMLGV RGPATKPSVA ESSKFIQGSS SLNMNGSGRL GIQGHQSESH TIQNGNDGPK 720 KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLTPNTSS 780 TDKKKTHPAV VPPGINLTLG KLVSSESSTS SSLPYCSDNV NNGSLPKINY TAGEQRNSSA 840 MSYKLPVSPQ TSGQSSEWLA HKSTPNSARE ALISTLAVAK KFDDVKGKSV HGSQQLSDKQ 900 YDSNANPWKM PASLLTTGQS SEKITPKSTP NSSQKALMST LAFATMFEFG MKKNQSAIRT 960 AVNSETGDSR TGEGTKTDSK NFEAFGHFV

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MEEPQEAGVG DPFSFPPHRR SHLRSVTYRN LVRLMSLCYG DSPLATAPPI IPLPQTPDNG  60
GNRGEQGGDD VREPGESIVS DSREPVNMVA NGGSEGAVFR DKGLNDTQMV IDEIEQIMGM  120
DDGQDLFDQN DMMVNSSMKG NGFQDGEIGR EQMLIADLEN IMKGNEDCHQ ISNCSAATLG  180
QNQGDNCSGI LLNNQDKHND CPPVVMESGT VGQTQVDMEG GNQKNIDPFG ISSNKSLAIE  240
VSKLSGKVKD QSSSLKTNLM HEKNEIQQKE MELENIIPSN EGMCSPGPVV EKGEPEEGEI  300
FGESLLVNES IDILLDDAVV SEKKVDDAVV SGKKVEETLI SGGTFDDKHP YCNEESTVND  360
GTSEFTFVNT NVAPIENKVT PGEFKGSETG QMVYELGMMQ RKECSGKIQK QIGHKNKVIE  420
TKSKKDVGLS NKKKQILTPA QKKEKKKKNK RKKRAEKNRQ LGVKRLKVQT VLKPKTVTYC  480
RHYLKGRCHE GEKCKFSHDT VPLTKSQPCS HFARQSCMKG NDCPFDHQLS KYPCINYTTK  540
GSCSRGDDCL FSHKKPLEGD VASLSIAPDL PLKSSLQSDS DIGLNISRAP PKNANALSYS  600
LGGFSDKSKK QIVADSLSKT PNLACKVVNS LFVSKSSIAE SIQLNQGSLS QKMNESGRVG  660
SQSNQRMLGV RGPATKPSVA ESSKFIQGSS SLNMNGSGRL GIQGHQSESH TIQNGNDGPK  720
KKPEMVPRGI NFLSFGKSSL EDSTRKVSLA NGADGYKQQP SDIEGGGGKF SSQLTPNTSS  780
TDKKKTHPAV VPPGINLTLG KLVSSESSTS SSLPYCSDNV NNGSLPKINY TAGEQRNSSA  840
MSYKLPVSPQ TSGQSSEWLA HKSTPNSARE ALISTLAVAK KFDDVKGKSV HGSQQLSDKQ  900
YDSNANPWKM PASLLTTGQS SEKITPKSTP NSSQKALMST LAFATMFEFG MKKNQSAIRT  960
AVNSETGDSR TGEGTKTDSK NFEAFGHFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	431	453	KKKQILTPAQKKEKKKKNKRKKR
2	782	786	KKKTH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22341	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589643	4e-48	JX589643.1 Gossypium hirsutum clone NBRI_GE24379 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726169.1	0.0	PREDICTED: uncharacterized protein LOC107937725 isoform X1
TrEMBL	A0A1U8MKP8	0.0	A0A1U8MKP8_GOSHI; uncharacterized protein LOC107937725 isoform X1
STRING	Gorai.009G032200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17241	7	8