PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 58201.5 Da PI: 7.9968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 3e-10 | 347 | 391 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f+ Lr+llP+ +K + +++L + eY+ sL Gh_A05G0224 347 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 391 6778********************97.....79999**********9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.488 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.46E-11 | 344 | 395 | No hit | No description |
SuperFamily | SSF47459 | 9.42E-15 | 345 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 346 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 347 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA 60 LVLFLEYRRL TFPLENNQGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG 120 CKSGEIELGS PNAVNLNMEM EMRTFFPEDF SRQSLVAVSE PTDPNNPSSS SSSLRSLATD 180 SPDSYLIFTV PNASRPQVPT GSETTPSLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP 240 SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGT 300 PTTAAARASL RAQSMLKRAI LFYRRFNLVR SEQQPRRRAP TVHQLHHMLS ERKRREKLNE 360 SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIMELNR QNQLLEAAQA SATSADEANG 420 SSNERLNIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN 480 TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 335 | 354 | RRRAPTVHQLHHMLSERKRR |
2 | 350 | 355 | ERKRRE |
3 | 351 | 356 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644366.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
TrEMBL | A0A1U8MKW2 | 0.0 | A0A1U8MKW2_GOSHI; putative transcription factor bHLH041 | ||||
STRING | Gorai.009G031900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-69 | bHLH family protein |