PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A05G0197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 464aa MW: 52204.3 Da PI: 7.0539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.6 | 5.2e-36 | 47 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgy 82 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + + Gh_A05G0197 47 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETR 142 799************.99*********5553344444434666646**********.555666799******************73334555544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Gh_A05G0197 143 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 ************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-38 | 41 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.01 | 47 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-16 | 48 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MNKSNLMSSI TSSHLIDAKL EEHQLCGSNH CPGCGTKLEV KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KDMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRT NAATTVDGTT NAVVVDPNNI 240 RRDSGIRSCS SKEQLIPLRD EVSGAGIAAA ALSSFAAAMD IQHLKSDHHL SFTPFSKSFD 300 QVGLAEASAA RETPTQGTGQ EIPGHHRGPN HMAHDHHHHH LLHHHQQQQQ HQHQIATTAF 360 HITRPSHPIS TIISPPPLHH TSIILDEDSF HVSRIMLQNE SFQQQQEQQN HKLGGRSATG 420 LEELIMGCTS TDIKEESSIT NPQEAEWLKY SSFWPDPDNH DHHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-12 | 45 | 189 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847200 | 0.0 | KC847200.1 Gossypium hirsutum NAC domain protein NAC23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016750054.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750055.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750056.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750057.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750058.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750059.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Refseq | XP_016750060.1 | 0.0 | PREDICTED: uncharacterized protein LOC107958726 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1U8PIM2 | 0.0 | A0A1U8PIM2_GOSHI; uncharacterized protein LOC107958726 | ||||
STRING | Gorai.009G028900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6635 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-170 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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