PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0024
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 378aa    MW: 42887.6 Da    PI: 7.5528
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0024genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.5e-0865114855
          AP2   8 wdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Gh_A05G0024  65 RHRWTGRFEAHLWDkNCWNEsQNKKGRQGAYDDEESAAHAYDLAALKYWG 114
                  7999**********99998898888888********************98 PP
2AP251.13.3e-16157208155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gh_A05G0024 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 208
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-1249124No hitNo description
PROSITE profilePS5103217.20150122IPR001471AP2/ERF domain
SMARTSM003804.7E-1263128IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1165124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-1065123IPR001471AP2/ERF domain
PfamPF008476.1E-12157208IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17157218IPR016177DNA-binding domain
CDDcd000182.80E-24157218No hitNo description
SMARTSM003801.2E-24158222IPR001471AP2/ERF domain
PROSITE profilePS5103218.334158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17158217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTKLSQVNQK NSAQSDSVSN NISTSNDVTK VKKRTRRSFP RDSPPQRSSI YRGSCMLIIW  60
LVNFRHRWTG RFEAHLWDKN CWNESQNKKG RQGAYDDEES AAHAYDLAAL KYWGQDTILN  120
FPVSTYQKEL KEMENQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYA TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLKPNQTN PTTPNSNIDT  240
TTASKLANPS HHQQHNPCFF TTTDDDNQQP QGTGVGIPSE TLLTQPRPGN ATSALGLLLQ  300
SSKFKEMMEM TSAVVVDQCQ FTPPPSTTSE PTRYSFPENV ETYLECQDSS SLADEDRDII  360
FGELNSFMAP MFSCDIDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750001.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-108AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8PFK20.0A0A1U8PFK2_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060
STRINGGorai.009G008800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.16e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]