PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G0019
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 258aa    MW: 29313.3 Da    PI: 4.5765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G0019genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-145699755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N++++ Lr l+P+      +K++Ka+i + A++YI++Lq
  Gh_A05G0019 56 LSERNRRKKLNQRLFALRALVPNI-----TKMDKASIIKDAIDYIQQLQ 99
                 67*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3934998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1853113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1754117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-125599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-1755104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-1458103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENVSEEYNQ NIWEPNYVFE NEEYSWAMDE LYDNDCSSSP DGAPDSASLS NSSNILSERN  60
RRKKLNQRLF ALRALVPNIT KMDKASIIKD AIDYIQQLQE QEATLQADIM ELENNNNNNP  120
KNHDLPMLLT SKNTNVFDSP IQLLQVYLTP LSHFHRLDLP LVFISSSKML QLNVTPTGDN  180
TLLVSITCTK RADTMLKLCQ LFESLNLKII TANLTVVSAN LFNTLFIRAN EKEKEELKMQ  240
IQTAIAAFNG PQTPPITI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1454114969Transcription factor MYC2
5gnj_B7e-1454114969Transcription factor MYC2
5gnj_E7e-1454114969Transcription factor MYC2
5gnj_F7e-1454114969Transcription factor MYC2
5gnj_G7e-1454114969Transcription factor MYC2
5gnj_I7e-1454114969Transcription factor MYC2
5gnj_M7e-1454114969Transcription factor MYC2
5gnj_N7e-1454114969Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6150475e-32JX615047.1 Gossypium hirsutum clone NBRI_GE58830 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690213.11e-152PREDICTED: transcription factor bHLH35-like isoform X2
TrEMBLA0A1U8JNC81e-150A0A1U8JNC8_GOSHI; transcription factor bHLH35-like isoform X2
STRINGGorai.009G002200.11e-150(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2492134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-51bHLH family protein