PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 392aa MW: 44429.7 Da PI: 9.0653 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.5 | 1.3e-32 | 244 | 299 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gh_A04G1454 244 KQRRCWSSELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 299 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.602 | 241 | 301 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 242 | 302 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-17 | 242 | 302 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-27 | 244 | 299 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-7 | 246 | 297 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGSVPSELSL DFRPKFIPKT ISNFLEEISL MGSVSDKVSK LDSFVKRLEE EMRKIDGFKR 60 ELPLSMLLLN DAILALKEES TQCIRRRNVE PVLEEFIPLK NNRKENNNHS DDEEEDDSKK 120 NWMSSVQLWN TEDDDHSSID DKLDTKRNHG DPFKNRGKVR GFMPFKANLS FAVKKEEKRE 180 IPIHGLTILT PGIKNPKVEL GFTESRMSRS RAASCSSLKG QVNYRSELQP LSDHQQQQQQ 240 ATRKQRRCWS SELHRRFVNA LQQLGGSQVA TPKQIRELMQ VDGLTNDEVK SHLQKYRLHT 300 RRLPPSTRTT TTPANESALV LGNGLWLSHD QYGDSSKGSS SQSGSPQGPL QLATNTGGTS 360 TTRGDSTEDE EDAKSEAYSW KTRTHKPGKD HV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18943 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734473.1 | 0.0 | PREDICTED: uncharacterized protein LOC107945126 | ||||
Refseq | XP_016734474.1 | 0.0 | PREDICTED: uncharacterized protein LOC107945126 | ||||
TrEMBL | A0A1U8N9L8 | 0.0 | A0A1U8N9L8_GOSHI; uncharacterized protein LOC107945126 | ||||
TrEMBL | A0A2P5X6J7 | 0.0 | A0A2P5X6J7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G150500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14535 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-45 | G2-like family protein |