PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1278
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 500aa    MW: 56628.8 Da    PI: 10.0857
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1278genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.41.5e-281567153
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
                 kprl+Wtp+LH+rFveav+q GG++kAtPk+++++m++ gLtl+h+kSHLQ +
  Gh_A04G1278 15 KPRLKWTPQLHQRFVEAVNQVGGADKATPKSLMRIMGISGLTLYHLKSHLQAF 67
                 79*************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-261367IPR009057Homeodomain-like
SuperFamilySSF466899.14E-141469IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-201568IPR006447Myb domain, plants
PfamPF002498.0E-61765IPR001005SANT/Myb domain
PfamPF143799.3E-20107153IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGHQNMNLVL STDTKPRLKW TPQLHQRFVE AVNQVGGADK ATPKSLMRIM GISGLTLYHL  60
KSHLQAFYHF FFCLYMDIIS FDNILDVNYS KTDCTGRIII AFIRSLQIAQ ALQMQMEVQR  120
KLHEQILVQR HLQLRIEAQG KYLQLVLKKA QETLVGYSSS SAGVGLAKAE LSRLGSMVNT  180
GCTSSLFSEL TKIGDSSLKE IERSPIRGTM SYVESSFTTS ESCRRKDVEP PQDENICTRK  240
SNTSAELSLM EVHTEKKPLI SGSSNQANGK KRSGSDFSDG ILVEQPLAKR REFPGEETGY  300
RLRKSGLLRF LPTFFPKSTA RSPFIFISGP AAASTPSGVL PPIKSHRSLH LFDIFIHHSK  360
ESKRESRRVL RRGKNGWLQA RGCQGGVDRF FGSRKMYNYV QYDLKEIAFP SSLPDPAHIK  420
RRRKLTWHER FLVLKEASRL YAASWVRDIG PDLRPNDYKK DDVTEGKSNG NKSRSTETEP  480
STLEDIGEEL YSVVSYLEMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-181567254Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6142762e-51JX614276.1 Gossypium hirsutum clone NBRI_GE57551 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679091.10.0PREDICTED: uncharacterized protein LOC107898046
SwissprotF4I2746e-68PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2P5PZ980.0A0A2P5PZ98_GOSBA; Uncharacterized protein
STRINGGorai.012G187000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.22e-71G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]