PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G1274
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 1678aa    MW: 188480 Da    PI: 8.5381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G1274genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-1614361481148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
      Gh_A04G1274 1436 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 1481
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011227.9E-42610735IPR025954DBC1/CARP1 catalytically inactive NUDIX hydrolase domain
PfamPF144434.2E-38612729IPR025954DBC1/CARP1 catalytically inactive NUDIX hydrolase domain
PROSITE profilePS5022210.69213471382IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.101.3E-613501414IPR011992EF-hand domain pair
SuperFamilySSF474739.33E-813501395IPR011992EF-hand domain pair
PROSITE profilePS500904.08914091430IPR017877Myb-like domain
SuperFamilySSF466897.89E-2014161490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-1014161443IPR009057Homeodomain-like
PROSITE profilePS5129425.89114311485IPR017930Myb domain
SMARTSM007171.2E-1614351483IPR001005SANT/Myb domain
PfamPF002492.8E-1514361481IPR001005SANT/Myb domain
CDDcd001675.58E-1114381481No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2114441482IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055078Biological Processsodium ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1678 aa     Download sequence    Send to blast
MMVSISRTVT KFCNLQKCQH VAWTESKILF NLMYSSRGTN AYGQQPYVGQ SGYAQNLGAG  60
YSSSSVGGPD GGAQMSLSSR HSSILGSSQD TEVGGYRALP SVSAHYGGQY SSIYGTSALS  120
ATQQVPAASS KGAGASALEA RNAYASALPD SPKYASTDYV SSASHSYSHK GDQMYAEKIP  180
DYPTVERRQF GERQGSYLGR DLSSEPTGRY SDSAFFGHQH QPDIYDRLDQ AVLLRQEQLL  240
KAQSASHDSS SRQADYLAAR SAAGRHSAQD LLSYGGRIEA DPRSLSLLSS SSSYGGQTPS  300
ILGAAPRRNV DDMMYPPSSA NPGYGVSLPP GRDYGTKGLH VTTLETEYPG STLSRSGLPR  360
IDERKDDRAG YLREFEMREE ERRREHLRER EKDRERERER ERERERERLR ERERERERLR  420
ILERREKERE REKERERERK RALEVTRART PPRVSRDHRG PSLTKEVRPV KRESPRREAS  480
HRRLSPVKEK RREYVSKVYT SNLIDVERGY LSIDKRYPRL FVSPEFSKVV INWPKGNLKL  540
SMHTHVSFEH DFIEDNLVES KELSSKLLPV EPEKPEQGST VWNAKMMLMS GLSRSSLEEL  600
SSEKIPDDRI PHICNILRFA VLKKDHSFMA IGGPCVSADG SNPAGDEFSL TQTALRYAQD  660
VVNLDLQKCQ HWNRFLEIHY DRVGKDGLFS HKEVTVLFVP DLSECLPSLD EWRAQWLAHR  720
KAVSERERQL SLKREKSKER KEGSKDKEAD NTKQTERGKS GKKIMSMSSS DGVVANKKEK  780
DGKCIEGDGS EGKASGGENK VLVKDGSEIT VEGGPGKKES GEAATAKPGV VKSVKKKIIK  840
RIVKQKVANK TAAEVNTASK PSNKVEDAGE QNTKSEIGSQ LEESSAGSAG IKTFARKKVT  900
KKEAVGKTDQ DEDNDVPLEA KMEVETGCSG DKPKDNSDAT AAAVENATVK TTLKKKIIKR  960
VPKRKVSATQ AKDEVAEIKN DGGEDEKKVV LAGTETSNVG KQTGSEKQGN AASSSKSGSK  1020
PEKENKKDEK LTNTESLNDK KKVNTKYTCD VKGGKLKEGE KPKDEKEEKD GKDESRSNTN  1080
KELKEKRKPE EPSLKHPGLI LQTKWSKDSK LRPLSLSLDS LLDYTDKDIE ESTFELSLFA  1140
EVLYEMLQYQ MGCRILTFLQ KLRVRFITKR NQRKRQREEK SDKETKKTSP TKRSKSNELP  1200
VMKNESTKLD ASTATQQGDE MIVTKEETTT DQVEEPKMAN EETNVDHVEE PKIKDEIEEE  1260
DPEEDPEEYE EMEDASQPNS SIEKNEEEKA QTDAKPEKGS EKEAEKIEAM ASTKSEITTK  1320
AASTDAGPEG EMSRKEQKVD PNKKVPAIDK DLLQAFRFFD RNRVGYVRVE DMRLMIHSLG  1380
KFLSHRDVKE LVQSALLESN TGRDDHILYD KLVRLQRCGK SCRLRWINYL RPDIKRGKFS  1440
LQEEQTIIQL HALLGNRWSA IATHLPKRTD NEIKNYWNTH LKKRLTKMGI DPVTHKPKTD  1500
ALGSTTGNPK DAANLSHMAQ WESARLEAEA RLVRESKLVP SNPPQSNHFT AVAPSPTPAT  1560
RPQCLDVLKA WQGVVCGLFT FNMDNNNLQS PTSTLNFMEN TTTLPMSSSS SVNGMFNENF  1620
GWNSSINPCE SGDNLKVEYG SDQIPELKER LDHPMELHEM DYSSEGTWFQ ELFGFNGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-161417148540108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409419RERERERERLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.103600.0boll| ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO133461870.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8264650.0EU826465.1 Gossypium hirsutum cultivar Acala Maxxa R2R3 MYB transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722915.10.0PREDICTED: cell division cycle and apoptosis regulator protein 1-like
TrEMBLA0A1U8M8320.0A0A1U8M832_GOSHI; cell division cycle and apoptosis regulator protein 1-like
STRINGGorai.012G186600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.17e-72myb domain protein 106