PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 156aa MW: 17245.8 Da PI: 10.2779 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.6 | 5.4e-28 | 8 | 153 | 1 | 115 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.......................kvkaeekewyfFskrdkkyatgkrk 74 +ppGfrFh tdeel+ +yL kk++++ +++ ++i+++d y++ P + + k k+ +ekewy F +rd ky++g r+ Gh_A04G1143 8 VPPGFRFHLTDEELILHYLMKKLSSSAFPV-SIIADADFYSSIPGTYQvKlalitlsmlsskesiinhyiasyKAVLGEKEWYIFRPRDGKYPNGARP 104 69****************************.89***********99984488999****999999998877554444999****************** PP NAM 75 nratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapk 115 n at +g+Wkatg+dk ++++ ++++g+kk Lvf+++++p+ Gh_A04G1143 105 NSATGDGFWKATGTDKIIVASsmaagrggVHSNIGVKKALVFHRQNKPS 153 *******************98666665443444**********998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-28 | 5 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.445 | 8 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-15 | 9 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MRHPHSSVPP GFRFHLTDEE LILHYLMKKL SSSAFPVSII ADADFYSSIP GTYQVKLALI 60 TLSMLSSKES IINHYIASYK AVLGEKEWYI FRPRDGKYPN GARPNSATGD GFWKATGTDK 120 IIVASSMAAG RGGVHSNIGV KKALVFHRQN KPSTHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-33 | 7 | 147 | 16 | 123 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-33 | 7 | 147 | 16 | 123 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-33 | 7 | 147 | 16 | 123 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-33 | 7 | 147 | 16 | 123 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 7 | 147 | 19 | 126 | NAC domain-containing protein 19 |
4dul_A | 4e-33 | 7 | 147 | 16 | 123 | NAC domain-containing protein 19 |
4dul_B | 4e-33 | 7 | 147 | 16 | 123 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458351.1 | 6e-65 | PREDICTED: NAC transcription factor NAM-B1-like | ||||
Swissprot | Q84TD6 | 2e-44 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A2P5YF69 | 3e-82 | A0A2P5YF69_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G169300.1 | 2e-64 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 5e-47 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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