PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G1130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 149aa MW: 17438.1 Da PI: 10.0881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.2e-11 | 8 | 95 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k lt+ dv k+ l++p + ++ gk+ + +++d++g+ W+++++ rkk+ v t+GW Fv+ +L +gD v +++ ++ Gh_A04G1130 8 FKKRLTKTDVEKR--LSIPSRKK-KCflnfRGKH--MAEFKVKDKHGKDWTFNCSTRKKDYPkPVVTSGWLLFVQWWNLAVGDEVKVYRKMDE 95 7888988888876..9***9985.5568775554..34899*************7655544369*******************9998866444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-16 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-12 | 7 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-12 | 7 | 95 | No hit | No description |
Pfam | PF02362 | 3.9E-8 | 8 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAIEKELFKK RLTKTDVEKR LSIPSRKKKC FLNFRGKHMA EFKVKDKHGK DWTFNCSTRK 60 KDYPKPVVTS GWLLFVQWWN LAVGDEVKVY RKMDEAGEEH YRIEVAVATN STADGTVNDD 120 QTEKLHNQPF FEFISQKPDL NIGKSKLIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 28 | KKRLTKTDVEKRLSIPSRKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243083 | 0.0 | AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612803.1 | 6e-41 | PREDICTED: uncharacterized protein LOC108458073 | ||||
Refseq | XP_017612804.1 | 6e-41 | PREDICTED: uncharacterized protein LOC108458073 | ||||
TrEMBL | A0A2P5W6C2 | 1e-106 | A0A2P5W6C2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G167500.1 | 4e-94 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22312 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 2e-07 | auxin response factor 4 |