PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G1127

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 296aa MW: 34022.9 Da PI: 9.5191

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G1127	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.9	2.4e-10	8	110	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.gr.s 88 f+k lt+ d k rl++p k ++ g + +++++++d + + W + +++r+ +++ vl+kGW +Fv+ +L gD+v+ ++ ++ Gh_A04G1127 8 FIKRLTKTDIEK--RLSVPSKKK-RCflnfhG---RHKVDVKVKDDNAKDWLFGCSIRREKDAypkPVLSKGWLQFVRCWKLAIGDIVIVNRVmEKdG 99 566665555544..488887764.33364423...35689*************999999998888*********************95534448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++++++kv+r+ Gh_A04G1127 100 KENYRIKVIRT 110 88888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-15	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-9	5	94	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.45E-14	6	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAIEKPVFIK RLTKTDIEKR LSVPSKKKRC FLNFHGRHKV DVKVKDDNAK DWLFGCSIRR 60 EKDAYPKPVL SKGWLQFVRC WKLAIGDIVI VNRVMEKDGK ENYRIKVIRT GVLPLVQNHD 120 ADRAIASNSS TARTITYDRT EGLRNLPKFI DFFELDSQQQ REMEHPRNLA LHNINVDEVP 180 INSSAAPYSK LHDANRVMAV ASYTNVEQEA TITFAGTEQT VSYDRTEGLH NQPGFMFEFI 240 SQKPDETDRK SRAIDCSDLG SQEQREMEHP SILALHNINM VKMPVTSSRT PSIKFF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243083	0.0	AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5PXC7	0.0	A0A2P5PXC7_GOSBA; Uncharacterized protein
STRING	Gorai.012G167400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17835	4	7