PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G0869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 36889 Da PI: 7.8666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 154 | 203 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a++k++g Gh_A04G0869 154 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDKAALKFKG 203 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-33 | 153 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-37 | 154 | 217 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.25E-35 | 154 | 212 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 154 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.895 | 154 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 154 | 212 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MFPPTSPNYI FYPNKHLPNP KLDPIHPPYL SLHIDYPWHL AIYQSILCIS QLLSLYHSFK 60 IFVKNKVDHR RHGKRPLPPE TSAEKRQGPD EFGTASWPES ADTSAIVTAL TQVIGSDDQQ 120 LIGFPQSSAP SSAQPHPGPP QLAVQDQENT RKRHYRGVRQ RPWGKWAAEI RDPKKAARVW 180 LGTFDTAEDA ALAYDKAALK FKGTKAKLNF PERAQWNMEA PSPGDSSTMR PEQNPTPLAP 240 PSSWSQDSYP HLLQYAQLLS SSNDADISYY TSNLFNEQQP LSPQFPSMSA SSQHYQQDLT 300 RFSTEYQSSD YQGQYGKDFD PSNRSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 151 | 213 | 2 | 65 | ATERF1 |
3gcc_A | 2e-26 | 151 | 213 | 2 | 65 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614034.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A2P5YW34 | 0.0 | A0A2P5YW34_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G125700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 2e-38 | related to AP2 6l |