PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0856
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 275aa    MW: 30680.9 Da    PI: 6.8754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0856genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.95e-15130176455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h + ErrRR+ri+ +++ L+el+P++      K +Ka+iL  A+++IksL+
  Gh_A04G0856 130 LHTISERRRRERIRGKIQALQELIPNC-----NKWDKASILDDAINCIKSLK 176
                  699***********************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-18123191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00122123180No hitNo description
SuperFamilySSF474591.14E-18124194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.596126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-12130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-16132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPQTSVSDF ISNISGHKDV GESSQNHGDE VLPHSLTIAA FVGQDDYFQN AFVMTSSFQT  60
HPINQNPQGI EFPEEISLEP DSGQSNQRKR KLFELENSKC LQQEVAGVSQ GLERNQNEQQ  120
QPKQKRRGKL HTISERRRRE RIRGKIQALQ ELIPNCNKWD KASILDDAIN CIKSLKVQVE  180
MMSMARGAFY QVPYMLQAVM HMRAGMVGMC FSSGLPTMPA ASPFSEPADL PLMSGTGTRN  240
LGLPLLQMPF FHSQLPLPAA ATPTMFPNYL TAVDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KRRGKLHTISERRRR
2126138RGKLHTISERRRR
3134139ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614779.10.0PREDICTED: transcription factor APG-like
TrEMBLA0A2P5XS690.0A0A2P5XS69_GOSBA; Uncharacterized protein
STRINGGorai.012G124100.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2193445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.35e-16phytochrome interacting factor 3-like 5