PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A04G0709 | ||||||||
Common Name | WRKY21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 298aa MW: 33637.4 Da PI: 4.8828 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.9 | 5e-29 | 114 | 171 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EE.EEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprs.YYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prs YY+Ct ++C++kk+ve+s+++ ++++itYeg H h Gh_A04G0709 114 DDGYKWRKYGQKSIKNSPNPRSlYYKCTNPRCNAKKQVEKSRDEADTLIITYEGLHLH 171 8********************99*********************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.065 | 108 | 174 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.4E-27 | 110 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-23 | 111 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-31 | 113 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-22 | 114 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MEEGGEKDDW VDDGSQEELV RELLDEESLF FVLSQGTIQP KAITSEEEVS KQRLSNVYSG 60 PRIEDIENAL SSVSNWKDQP QQTTRINSML ERNLSKIESK YTLKVRSCGN GMADDGYKWR 120 KYGQKSIKNS PNPRSLYYKC TNPRCNAKKQ VEKSRDEADT LIITYEGLHL HFVDPYFPPL 180 NDQPFQHDNN APTKKPKKAI SESDESRAFG LPQTMQIQEA TTNNINSAVS LEGCPCPQEV 240 ASEGLLEDVV PWIIRNPFHN NIISSNSTSC SSSQTRSPPV SPSSLSWSPN YNPWPVFI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-17 | 112 | 175 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF031077 | 0.0 | KF031077.1 Gossypium hirsutum WRKY transcription factor 21 (WRKY21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614685.1 | 0.0 | PREDICTED: probable WRKY transcription factor 49 | ||||
TrEMBL | A0A1U8IQV2 | 0.0 | A0A1U8IQV2_GOSHI; probable WRKY transcription factor 49 | ||||
STRING | Gorai.012G104800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9405 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-50 | WRKY DNA-binding protein 49 |