PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A04G0563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 26326.1 Da PI: 9.585 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.3 | 4e-16 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le F+++ +++ +++ +L+++lg + rq+ vWFqNrRa++k Gh_A04G0563 61 KKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWK 114 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 104.5 | 8.7e-34 | 60 | 152 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLg qprq+avWFqnrRAR+k+k+lE+ ++aL++++ +++e+++L++ev++L++ l+e Gh_A04G0563 60 EKKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGRQPRQIAVWFQNRRARWKAKELERLCNALQHHLHLVSKETQKLQHEVSKLKAMLRE 152 69**************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.196 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-13 | 58 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-16 | 60 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-13 | 61 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.96E-14 | 61 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 66 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEWNGTLSFV PGQPPSLTSL YNYNYDQYFP GMEMMNVGLA EAAAMEKKKK KKKIYMNNEE 60 KKKRLTNEQL EWLEMSFQED IKLDPRRKMK LSRELGRQPR QIAVWFQNRR ARWKAKELER 120 LCNALQHHLH LVSKETQKLQ HEVSKLKAML REQPTRNQVS TGYTEISGEE TIESTLIHCS 180 NKYMVVPNNH HPIADQCSYL FNVDKNNPNP VGSTYWGEQL PTNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 52 | KKKKKKK |
2 | 46 | 63 | KKKKKKKIYMNNEEKKKR |
3 | 49 | 63 | KKKKIYMNNEEKKKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614786 | 0.0 | JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016739491.1 | 1e-169 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1U8NKG3 | 1e-168 | A0A1U8NKG3_GOSHI; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | Gorai.009G409600.1 | 1e-152 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28463 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 5e-35 | homeobox 51 |