PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0414
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 300aa    MW: 33821.9 Da    PI: 7.4679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0414genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.2e-50211473128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  pGfrFhPtdeelv +yL++kv++k+l++ + ik++diyk++PwdLpk + +++e e yfF++r +ky+++ r+nrat sg+Wkatg dk+++s+ +++
  Gh_A04G0414  21 PGFRFHPTDEELVGFYLQRKVDNKPLKI-DLIKQIDIYKFDPWDLPKaSSREGEIESYFFCRRGRKYRNSIRPNRATGSGFWKATGIDKPIYSNeGSA 117
                  9***************************.99***************51444444599************************************95566 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +glkktLv+y+g+a kg+ktdW+mhe+rl
  Gh_A04G0414 118 CIGLKKTLVYYRGTAGKGTKTDWMMHEFRL 147
                  6***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.59919182IPR003441NAC domain
SuperFamilySSF1019411.19E-5420182IPR003441NAC domain
PfamPF023651.0E-2521147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNGVVQACAD NKDEEEDAPL PGFRFHPTDE ELVGFYLQRK VDNKPLKIDL IKQIDIYKFD  60
PWDLPKASSR EGEIESYFFC RRGRKYRNSI RPNRATGSGF WKATGIDKPI YSNEGSACIG  120
LKKTLVYYRG TAGKGTKTDW MMHEFRLPNS THINASNATL SNPKSLAAEE AEVWTICRIF  180
KRSVSHRKYT PDWREIASNR TSTATPSPQI ICSMGLGSNI HETYIAFGSP LVQSCDEKPG  240
FSGMNGRNQW HAEQLSIAQP SSMVSSSSFS SCPENNDFFT HANWDELKSV VEFAFDPFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-452118819171NO APICAL MERISTEM PROTEIN
1ut4_B3e-452118819171NO APICAL MERISTEM PROTEIN
1ut7_A3e-452118819171NO APICAL MERISTEM PROTEIN
1ut7_B3e-452118819171NO APICAL MERISTEM PROTEIN
3swm_A3e-452118822174NAC domain-containing protein 19
3swm_B3e-452118822174NAC domain-containing protein 19
3swm_C3e-452118822174NAC domain-containing protein 19
3swm_D3e-452118822174NAC domain-containing protein 19
3swp_A3e-452118822174NAC domain-containing protein 19
3swp_B3e-452118822174NAC domain-containing protein 19
3swp_C3e-452118822174NAC domain-containing protein 19
3swp_D3e-452118822174NAC domain-containing protein 19
4dul_A3e-452118819171NAC domain-containing protein 19
4dul_B3e-452118819171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472090.0KC847209.1 Gossypium hirsutum NAC domain protein NAC32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605765.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK552e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P5YXI40.0A0A2P5YXI4_GOSBA; Uncharacterized protein
STRINGGorai.009G357700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.18e-93NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]