PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0201

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 388aa MW: 43050.8 Da PI: 7.6886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0201	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	1.9e-05	277	315	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +++eYIk L Gh_A04G0201 277 VRKEKMGDRISALQQLVSPF-----GKTDTASVLSEVIEYIKFL 315 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.02E-7	259	319	No hit	No description
PROSITE profile	PS50888	12.601	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-11	276	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-8	276	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MADEFNPGPN WWDRTAAPSS SSSSSSSSSV LNNSLGTFGG WNPEMADIKA RSPMDSISSS 60 SSSSVSAPDL HMMGLGLSSQ AMDWNQAFMR GDHKSKTSFK SMLEEHNLNA SNPNYHQEMM 120 GFKHQSSSQF SPCSSDSSII NNMDSTSLYG SPSTILQGLL GTENQTYENR SINYQYGMNN 180 NDPLLPNSWS KVPQFLKNSP PKNGQLHFSN NAPFWNPSAA TTAPMVDHRP PGFFPSFPTL 240 NFDEKPKNNI SEVKKNGNET SSRRPRNEMP SLPAFKVRKE KMGDRISALQ QLVSPFGKTD 300 TASVLSEVIE YIKFLHEQIN VLSTPYKKTG ATTQQQQQQN CEKSKDFEGF KHDLRSRGLC 360 LVPVSSTFPM TLESTVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MADEFNPGPN WWDRTAAPSS SSSSSSSSSV LNNSLGTFGG WNPEMADIKA RSPMDSISSS  60
SSSSVSAPDL HMMGLGLSSQ AMDWNQAFMR GDHKSKTSFK SMLEEHNLNA SNPNYHQEMM  120
GFKHQSSSQF SPCSSDSSII NNMDSTSLYG SPSTILQGLL GTENQTYENR SINYQYGMNN  180
NDPLLPNSWS KVPQFLKNSP PKNGQLHFSN NAPFWNPSAA TTAPMVDHRP PGFFPSFPTL  240
NFDEKPKNNI SEVKKNGNET SSRRPRNEMP SLPAFKVRKE KMGDRISALQ QLVSPFGKTD  300
TASVLSEVIE YIKFLHEQIN VLSTPYKKTG ATTQQQQQQN CEKSKDFEGF KHDLRSRGLC  360
LVPVSSTFPM TLESTVDFWT PTFGGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016729813.1	0.0	PREDICTED: transcription factor bHLH123-like isoform X2
Swissprot	Q8GXT3	6e-64	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8MWB3	0.0	A0A1U8MWB3_GOSHI; transcription factor bHLH123-like isoform X2
STRING	Gorai.009G429100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]