PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A04G0106
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 205aa    MW: 23211.2 Da    PI: 8.6312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A04G0106genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.2e-211868155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++ a+  l+g
  Gh_A04G0106 18 PKYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDTAAMTLRG 68
                 79********.**********883....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-141868IPR001471AP2/ERF domain
CDDcd000186.93E-331878No hitNo description
SuperFamilySSF541713.79E-231977IPR016177DNA-binding domain
PROSITE profilePS5103224.0261976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-321976IPR001471AP2/ERF domain
SMARTSM003802.6E-381982IPR001471AP2/ERF domain
PRINTSPR003674.1E-112031IPR001471AP2/ERF domain
PRINTSPR003674.1E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRRGRGLAAA VIPDGEEPKY RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD SAEEAARAYD  60
TAAMTLRGPK AKTNFPINPS NTTAFPIDHH HRRLYLMGNF QDPKMNPQRP TRSSMSSRVE  120
SFSGPRPTQP PLESVVLDRK HYHHRKPPVL PEDFHSDCDS SSSVVVDDGD MASSSCKQNQ  180
TLMPFDLNFP PLDEVDDLYC TALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-22476572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.29150.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5552881e-164KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720368.11e-153PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803392e-46ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1U8M4111e-151A0A1U8M411_GOSHI; ethylene-responsive transcription factor 3-like
STRINGGorai.009G443400.11e-122(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.15e-33ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]