PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A04G0041

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 925aa MW: 104000 Da PI: 5.6486

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A04G0041	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.5	5.9e-05	698	758	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Gh_A04G0041 698 KRKRTIMNDEQVTIMERALLDEPEMQRNTalIQSWADKLshhgsEVTCSQLRNWLNNRKAR 758 79****************988887654449**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.782	695	762	IPR001356	Homeobox domain
SMART	SM00389	2.9E-4	697	766	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-4	698	765	IPR009057	Homeodomain-like
CDD	cd00086	1.96E-4	698	761	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence Send to blast
MRQGEGEAIS TVEQQAIDLI SVVKEIHGLN SQELNKLLRD SENFTIHFVT EKGLDVKIDV 60 EKLAGFLPLH LIAVLVSSDR DEALLRYLLC GIRILHSLCE LAPRHTKLEQ ILLDDVKVSE 120 QLIDLVFYVL IVLNDYRQDI HDSGPVPVLL SALVACSFYL LTGCISSQWQ DLALVMVAHP 180 KVDMFMDVAC RAIHLVVRFL QNKLSVQHIE ICVKSSSTTE SMVNYLCQQC EASLQFLQLL 240 CQQKPFRERL LKNKELCGKG GILFLAQSIL KLHAPDFAES SAIVAALSRL KAKVLSILLH 300 LCEAESISYL DEVASSPASL DLAKSVAFEV LELLKTGLSK NPKHLSASSD RTYPMGLLQL 360 NAMRLADIFS DDSNFRSYIT VYFTEFLSAI FSLSHGDFLS MWCSADLPVR EEDATLYYEV 420 FAAAGWALDS VSSSDLSNTS NLEFTFIPNS NMSQASYVHQ RTSLFVKIIA NLDCFVPNIC 480 EEQERNLFLH KFLGCLLMDP SKLLPSYAFI TGPQKASAVQ RNLRSLLSHA ESLIPTFLNM 540 EDLQLLRVFF DNLQLLMNPS EFEENRVQDD RNLGGCSSPL LRREPPNLNN RNGNLKEEMS 600 ENSAFQEEHF YVRNSHMDQA DGVTRRDMID DKDKSITPSG LKEIDRDVQN VETSGSDTSS 660 TKGKNAVDKL AERQRENADV REDEKVETVQ TEEKHRRKRK RTIMNDEQVT IMERALLDEP 720 EMQRNTALIQ SWADKLSHHG SEVTCSQLRN WLNNRKARLA RLSKDARPPP EPDNAFAGKQ 780 GGPQQGHSLR APDSPGQETT PSNTRGTRSM SRMNTSENPV APEFVDYGAA EFVQCKAGQF 840 IVLVDGRGQE IGKGKVHQVQ GKWWGKSLEE SGSCVVDVVD LKADRWVKLP YPSESTGTSF 900 EDAEKKLGVM RVMWDSNKIF MLRPQ

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence Send to blast

MRQGEGEAIS TVEQQAIDLI SVVKEIHGLN SQELNKLLRD SENFTIHFVT EKGLDVKIDV  60
EKLAGFLPLH LIAVLVSSDR DEALLRYLLC GIRILHSLCE LAPRHTKLEQ ILLDDVKVSE  120
QLIDLVFYVL IVLNDYRQDI HDSGPVPVLL SALVACSFYL LTGCISSQWQ DLALVMVAHP  180
KVDMFMDVAC RAIHLVVRFL QNKLSVQHIE ICVKSSSTTE SMVNYLCQQC EASLQFLQLL  240
CQQKPFRERL LKNKELCGKG GILFLAQSIL KLHAPDFAES SAIVAALSRL KAKVLSILLH  300
LCEAESISYL DEVASSPASL DLAKSVAFEV LELLKTGLSK NPKHLSASSD RTYPMGLLQL  360
NAMRLADIFS DDSNFRSYIT VYFTEFLSAI FSLSHGDFLS MWCSADLPVR EEDATLYYEV  420
FAAAGWALDS VSSSDLSNTS NLEFTFIPNS NMSQASYVHQ RTSLFVKIIA NLDCFVPNIC  480
EEQERNLFLH KFLGCLLMDP SKLLPSYAFI TGPQKASAVQ RNLRSLLSHA ESLIPTFLNM  540
EDLQLLRVFF DNLQLLMNPS EFEENRVQDD RNLGGCSSPL LRREPPNLNN RNGNLKEEMS  600
ENSAFQEEHF YVRNSHMDQA DGVTRRDMID DKDKSITPSG LKEIDRDVQN VETSGSDTSS  660
TKGKNAVDKL AERQRENADV REDEKVETVQ TEEKHRRKRK RTIMNDEQVT IMERALLDEP  720
EMQRNTALIQ SWADKLSHHG SEVTCSQLRN WLNNRKARLA RLSKDARPPP EPDNAFAGKQ  780
GGPQQGHSLR APDSPGQETT PSNTRGTRSM SRMNTSENPV APEFVDYGAA EFVQCKAGQF  840
IVLVDGRGQE IGKGKVHQVQ GKWWGKSLEE SGSCVVDVVD LKADRWVKLP YPSESTGTSF  900
EDAEKKLGVM RVMWDSNKIF MLRPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	695	700	RRKRKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8823	0.0	boll\| leaf\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718428.1	0.0	PREDICTED: nodulin homeobox-like
Refseq	XP_016718429.1	0.0	PREDICTED: nodulin homeobox-like
TrEMBL	A0A1U8LYF3	0.0	A0A1U8LYF3_GOSHI; nodulin homeobox-like
STRING	Gorai.009G451700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8179	6	7