PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G2155
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 270aa    MW: 30693.9 Da    PI: 6.5897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G2155genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09153196755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ r RR++i ++ +eL +l+P       +K++ ae+L+ A +Y+k+Lq
  Gh_A03G2155 153 IAARERRRKITKKTQELGKLVPGG-----TKMNTAEMLQAAFKYVKYLQ 196
                  56799*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.29E-10144199No hitNo description
SuperFamilySSF474599.81E-12145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.455146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6154196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MALSSYYSNC ETDVQNLNSE PTHQITKAVQ ADDHHEQQQQ HLQYYCDPPF EPPLTFLDPC  60
IDLNNNFLHP ENYSAPLLPY DPLITPYDYF SSYPCPKRHK LIEDHCLMPG FFDGVALNSC  120
PHSMNGVYNL EGTHTVGNCK KISDEKCVSV QSIAARERRR KITKKTQELG KLVPGGTKMN  180
TAEMLQAAFK YVKYLQAQLG ILQLMNSFPE NKEGNRKDKE SMQIVTSSKV QEKLYIEEKC  240
LVPKDFVLSL TTLSRPPLSD ELTRLLSSSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632540.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A2P5X8J50.0A0A2P5X8J5_GOSBA; Uncharacterized protein
STRINGGorai.005G218900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1695449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.16e-26bHLH family protein