PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G2142
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 408aa    MW: 45436.1 Da    PI: 6.8988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G2142genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19197247256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Gh_A03G2142 197 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 247
                  59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-33196256No hitNo description
Gene3DG3DSA:3.30.730.104.1E-32197255IPR001471AP2/ERF domain
SMARTSM003802.7E-40197260IPR001471AP2/ERF domain
PROSITE profilePS5103222.932197254IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23197255IPR016177DNA-binding domain
PRINTSPR003677.9E-11198209IPR001471AP2/ERF domain
PfamPF008472.1E-12198247IPR001471AP2/ERF domain
PRINTSPR003677.9E-11220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTQANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK  60
ICSPEHHHPL PSSASLAHHS SSSSSSSSSS SSSSLPSSRL VFPFAFDASQ PPIFFPRQYG  120
NTQQQQQQHG LIYRPLYAAE TSLSPQQQQQ QQQLLQYWSD ALNLSPRGRM MTTTTKLGQD  180
GGQMFRPPLQ HVHTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAALAYDRE  240
AFKLRGENAR LNFPELFLNK DKDTSSPTPT STVSPPQTPH ESSKQEQGPK LVINPTAAAQ  300
PQGDNPDSDE MHITAAEGSS GAGEGVSGSQ ELVWGDMAEA WFNTIPAGWG PASPVWDDLV  360
TTNNLLFPSN LPFTSQIQQE LNDSDHQKQH DVSASASSPM KPFFWKDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21196254160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323100.0EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665512.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A1U8HHC30.0A0A1U8HHC3_GOSHI; ethylene-responsive transcription factor ERF054-like
STRINGGorai.005G202900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-51ERF family protein