PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G2142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 408aa MW: 45436.1 Da PI: 6.8988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 197 | 247 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Gh_A03G2142 197 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 247 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-33 | 196 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 197 | 255 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 197 | 260 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.932 | 197 | 254 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 197 | 255 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-11 | 198 | 209 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 198 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 220 | 236 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MTQANNRGKS QKGVVDETEK MTTFQDGETE KGKHLDSGSE RRQWKPVFDE ASISQRPLKK 60 ICSPEHHHPL PSSASLAHHS SSSSSSSSSS SSSSLPSSRL VFPFAFDASQ PPIFFPRQYG 120 NTQQQQQQHG LIYRPLYAAE TSLSPQQQQQ QQQLLQYWSD ALNLSPRGRM MTTTTKLGQD 180 GGQMFRPPLQ HVHTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAALAYDRE 240 AFKLRGENAR LNFPELFLNK DKDTSSPTPT STVSPPQTPH ESSKQEQGPK LVINPTAAAQ 300 PQGDNPDSDE MHITAAEGSS GAGEGVSGSQ ELVWGDMAEA WFNTIPAGWG PASPVWDDLV 360 TTNNLLFPSN LPFTSQIQQE LNDSDHQKQH DVSASASSPM KPFFWKDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 196 | 254 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532310 | 0.0 | EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665512.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A1U8HHC3 | 0.0 | A0A1U8HHC3_GOSHI; ethylene-responsive transcription factor ERF054-like | ||||
STRING | Gorai.005G202900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-51 | ERF family protein |