PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G2117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARR-B | ||||||||
Protein Properties | Length: 669aa MW: 72615.8 Da PI: 6.8457 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3e-28 | 229 | 282 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Gh_A03G2117 229 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 282 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.9 | 3.6e-26 | 45 | 153 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++l+q+l + +y +v+++ +++ al+ll+e++ +D+il D+ mp+mdG++ll++ e +lp+i+++a g+ + + ++ Ga Gh_A03G2117 45 VLVVDDDITCLKILEQMLHRCRY-HVTTCPQAKVALNLLRERKgcFDVILSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSADGSTRAVMKGIRHGAC 139 89*********************.*******************************************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Gh_A03G2117 140 DYLIKPIREEELKN 153 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 28 | No hit | No description |
PIRSF | PIRSF036392 | 2.7E-163 | 14 | 656 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 8.0E-42 | 42 | 178 | No hit | No description |
SuperFamily | SSF52172 | 9.82E-36 | 42 | 168 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.4E-30 | 43 | 155 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.275 | 44 | 159 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.7E-23 | 45 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.36E-26 | 46 | 158 | No hit | No description |
PROSITE profile | PS51294 | 11.209 | 226 | 285 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-19 | 226 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-30 | 226 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 229 | 282 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-7 | 231 | 280 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MATMHRVVQS SVSTSDATTT SYGGLTSCKA ADIVISDQFP AGLRVLVVDD DITCLKILEQ 60 MLHRCRYHVT TCPQAKVALN LLRERKGCFD VILSDVYMPD MDGYKLLEHV GLEMDLPVIM 120 MSADGSTRAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDTDQ 180 HKRGHDDAEY GSSANDATDT SLKPLKKRSN SKEGDDGEID NDDPSTSKKP RVVWSVELHQ 240 QFVSAVNQLG IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRISGV AQQGGIANPL 300 CGPVEANVKI GSLGSFNIQP LAASGQIPPQ TLAALHAELL GRPAGNLVVA MDQSALLQAT 360 PHGPKCIQVD HGVAFIQHLV KSESSSSKHF SQSFAPVEDV ASGFRSWPSN NIDTAGPSNS 420 GGLSTQNGNM LIDLLQQQQQ LQKPQQRSTV SELRRSINVQ PSCHVVPSQS SASFQAGNSP 480 VSVTQNGSYS RTAVIDYNFL SSQSNCPSLN IGQVSDVNLQ TTGVLSGYIP PASVSPSVSS 540 CSVYADNCAS QQVQTSSITF KASRRLPGFV HSTSNIPDPY GSTKSGDLLN QEPFNNLGYI 600 NKGTCLPAKF AVDEFQSHLS SSSHGKVFSE NIGTRVKQEP SMEFGDNAKV GIPMLQQFPP 660 NDLMSVFTE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-23 | 225 | 288 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2446 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016693655.1 | 0.0 | PREDICTED: two-component response regulator ORR21-like | ||||
Swissprot | A2XE31 | 1e-157 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
Swissprot | Q8H7S7 | 1e-157 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | A0A1U8JTT5 | 0.0 | A0A1U8JTT5_GOSHI; Two-component response regulator | ||||
STRING | Gorai.005G156900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8150 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-121 | response regulator 2 |
Publications ? help Back to Top | |||
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