PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G2043
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 481aa    MW: 54369.4 Da    PI: 8.7965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G2043genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-1856102148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd ll++avk+   ++Wk Ia+ ++ gRt+ qc +rwqk+l
      Gh_A03G2043  56 KGGWTKEEDNLLIEAVKKCNARNWKGIAEFLP-GRTDIQCLHRWQKVL 102
                      688*****************************.************986 PP
2Myb_DNA-binding57.33.6e-18108154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ + ++vk++G ++W+ Ia+ +g gR +kqc++rw+++l
      Gh_A03G2043 108 KGPWTKEEDDCITRLVKKFGCRRWAVIAKFVG-GRIGKQCRERWYNHL 154
                      79******************************.*************97 PP
3Myb_DNA-binding42.61.4e-13160202145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W +eE+ +l  +++ +G++ W++ a+ ++ gRt + +k++w+
      Gh_A03G2043 160 KDSWGEEEEAILTYYHQIYGNK-WTKLAELLP-GRTNNAIKNHWN 202
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.36352102IPR017930Myb domain
SuperFamilySSF466897.18E-1753109IPR009057Homeodomain-like
SMARTSM007171.3E-1655104IPR001005SANT/Myb domain
PfamPF002493.1E-1656102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2458118IPR009057Homeodomain-like
CDDcd001672.40E-1459102No hitNo description
PROSITE profilePS5129427.543103158IPR017930Myb domain
SuperFamilySSF466894.21E-29105201IPR009057Homeodomain-like
SMARTSM007179.9E-17107156IPR001005SANT/Myb domain
PfamPF002491.7E-17108154IPR001005SANT/Myb domain
CDDcd001677.84E-15110154No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24119161IPR009057Homeodomain-like
PROSITE profilePS5129415.634159209IPR017930Myb domain
SMARTSM007171.2E-12159207IPR001005SANT/Myb domain
PfamPF002496.6E-11160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19162209IPR009057Homeodomain-like
CDDcd001671.44E-8162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVEVKKEKEE YYYEDLIEED RSSASPYSFS SSSFNTITAS PSLQGRVTGP TRWSIKGGWT  60
KEEDNLLIEA VKKCNARNWK GIAEFLPGRT DIQCLHRWQK VLNPGISKGP WTKEEDDCIT  120
RLVKKFGCRR WAVIAKFVGG RIGKQCRERW YNHLDPTIRK DSWGEEEEAI LTYYHQIYGN  180
KWTKLAELLP GRTNNAIKNH WNCTVKKKLD LHSPSRYAKG IDKGSSDFHD RETMPKGMKV  240
KDVRQRFDET KFVNQNVTVD YSAETCNLDL VLGIAGPPEI KLGADPGNVG KYSSPGVPYD  300
QMPVHFNEKG TIDDSIVGSV TRYDKHTWVH EPQPALFRMV SQDGCALLAS TSVGSPSSSL  360
AFNPESKIRR TNTAYSSDCS LHNEPAQREG SISTVFPIVE NGDIHFKSSF CHASPPNKLI  420
GSLSPNSRSL ESILRISAMT FKNTPSIIRK RSYKKGWNDN ISESAASYPV RTFSCFHMEE  480
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-62552096159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-62552096159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667667.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A1U8HNP50.0A0A1U8HNP5_GOSHI; myb-related protein B-like
STRINGGorai.003G160500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2070356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.23e-72myb domain protein 3r-5