PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G2026

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 641aa MW: 71341.2 Da PI: 6.1262

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G2026	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	410.1	2.1e-125	257	626	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL +c+ea+ s++ +++++++++l elasp+g+ + Rl+ay+teALa r++r +++++++ +p+e + + +++ +al+l+++v+Pi+kf h+t Gh_A03G2026 257 LVHLLAACVEAIGSKNIAAINHFISQLGELASPRGTVISRLTAYYTEALALRVTRVWPHIFHITTPRELD-RLDDDNGTALRLLNQVTPIPKFVHFTS 353 68**************************************************************9998.568888999************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg++rvHi+Dfdi+qGlQWp+L+q+La+R+++p ++R+Tg+g+ sk+el+etg+rLa fAe+l++pfef++ v++rled++l++L+ Gh_A03G2026 354 NEILLRAFEGKDRVHIVDFDIKQGLQWPSLFQSLAARTNPPSHVRVTGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHA 446 ***********************************************....***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++aVn+v+qlh++l + +++L l++s++P v+++eqe++ n ++ +r++++l+yysa+fds++ +lp es rik+E++ ++rei Gh_A03G2026 447 KENESIAVNCVFQLHKTLYDGNGGV--LRDFLGLIRSINPIAVIIAEQETENNILNLEARVANSLRYYSAIFDSIDFTLPLESPVRIKIEEM-FAREI 541 *************96655444..489**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 +n++aceg++r+erh+++ekWr+ +e+ GFk + +++++ q ++ll+++ s+ y+v+++ +g+l+l W d+pL++vSaW+ Gh_A03G2026 542 RNLIACEGSDRFERHTSFEKWRKLMEQGGFKCMGITDRELVQSQMLLKMYTSENYSVKKQgpdgdDGALTLSWLDEPLYTVSAWT 626 ***********************************************99977777779****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.082	231	601	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-123	257	626	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE TSTVQFQACH FQTSMSTQRL DLPCNFSRKE TSKSQTIRPA 60 VESKAKTSSC SIKQNTRLPP LTTTSAQNPF EGRIEIKGKS LKRFAEQGLV DDETVINRAK 120 RKKGSSDDEK PDDHGGLSLG QLGAGNFWFQ PSLSGDEERG TPPLPLSNNP WIDSVITELT 180 DVGEKDVETT HRPGKEASGS GSMSTSSESH SLGPPLNVRA KEYERGNGSG NPYPHEGARL 240 GANEEEINHR EHEGFELVHL LAACVEAIGS KNIAAINHFI SQLGELASPR GTVISRLTAY 300 YTEALALRVT RVWPHIFHIT TPRELDRLDD DNGTALRLLN QVTPIPKFVH FTSNEILLRA 360 FEGKDRVHIV DFDIKQGLQW PSLFQSLAAR TNPPSHVRVT GIGESKQELN ETGDRLAGFA 420 EALNLPFEFH PVVDRLEDVR LWMLHAKENE SIAVNCVFQL HKTLYDGNGG VLRDFLGLIR 480 SINPIAVIIA EQETENNILN LEARVANSLR YYSAIFDSID FTLPLESPVR IKIEEMFARE 540 IRNLIACEGS DRFERHTSFE KWRKLMEQGG FKCMGITDRE LVQSQMLLKM YTSENYSVKK 600 QGPDGDDGAL TLSWLDEPLY TVSAWTPIDV AGSSSSFSQP S

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE TSTVQFQACH FQTSMSTQRL DLPCNFSRKE TSKSQTIRPA  60
VESKAKTSSC SIKQNTRLPP LTTTSAQNPF EGRIEIKGKS LKRFAEQGLV DDETVINRAK  120
RKKGSSDDEK PDDHGGLSLG QLGAGNFWFQ PSLSGDEERG TPPLPLSNNP WIDSVITELT  180
DVGEKDVETT HRPGKEASGS GSMSTSSESH SLGPPLNVRA KEYERGNGSG NPYPHEGARL  240
GANEEEINHR EHEGFELVHL LAACVEAIGS KNIAAINHFI SQLGELASPR GTVISRLTAY  300
YTEALALRVT RVWPHIFHIT TPRELDRLDD DNGTALRLLN QVTPIPKFVH FTSNEILLRA  360
FEGKDRVHIV DFDIKQGLQW PSLFQSLAAR TNPPSHVRVT GIGESKQELN ETGDRLAGFA  420
EALNLPFEFH PVVDRLEDVR LWMLHAKENE SIAVNCVFQL HKTLYDGNGG VLRDFLGLIR  480
SINPIAVIIA EQETENNILN LEARVANSLR YYSAIFDSID FTLPLESPVR IKIEEMFARE  540
IRNLIACEGS DRFERHTSFE KWRKLMEQGG FKCMGITDRE LVQSQMLLKM YTSENYSVKK  600
QGPDGDDGAL TLSWLDEPLY TVSAWTPIDV AGSSSSFSQP S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-72	241	627	1	380	Protein SCARECROW
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016733176.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1U8N258	0.0	A0A1U8N258_GOSHI; scarecrow-like protein 28
STRING	Gorai.003G162400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein