PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1857

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 783aa MW: 87028.8 Da PI: 7.088

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1857	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	495	545	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l+dl+++F++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Gh_A03G1857 495 EKTIGLQDLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 545 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	1.45E-5	294	391	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	2.2E-4	294	391	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.393	484	565	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-25	498	545	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.61E-21	679	770	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.7E-21	682	766	No hit	No description
PROSITE profile	PS51745	23.455	685	768	IPR000270	PB1 domain
SMART	SM00666	2.0E-23	685	768	IPR000270	PB1 domain
CDD	cd06407	1.11E-38	686	767	No hit	No description
Pfam	PF00564	6.2E-15	686	767	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MFFKNMEGDV GFYDDAAVDM DFIDELLFEG FNINSDRGQA GLDLSRSENR AVTSMSRLME 60 AVLYLKESTK GRDDVLIQIW VPVKKGGKHV LTTQGQPYSL NTNCKSLEIF RDVSEAYSFP 120 AEEDSEGPIG LPGRVFLGKL PEWTPDVRFF RRDEYRRVGL AQKYNVGGSF ALPVFEQGSG 180 TCLGVVEIVS CTQKINYRPE LEHVCKALEA VDLRSSHCFT PPNVKGYNEL YRVALPEITE 240 VLRSICKRYE LPLALTWAPS RHSDKNFYCC VSTSGSSCFV ADEGLTGFLE ACSEHQLFRG 300 QGIVGRAFTT NKPCFATDIT AFSKTIYPLS HHARMFGLRA AVAIPLQSAF TESVVFVLEL 360 FLPKDCHDSK AQKRMLNSLS GFMQQACHSL QVIVDKELEE EVILPVKEMF KSNKKETEFR 420 IFSSKEDSPV ESSSWIAHMM EAQQKGKGVS SSWEYKKELD FRQVDHQHAQ TNTVDSGHRD 480 LAEKKAGEKK RKKTEKTIGL QDLRQHFAGS LKDAAKSIGV CPTTLKRICR QHGITRWPSR 540 KIKKVGHSLR KLQVVIESVQ GAEGAIQIGS FYSSFPELSS PICSNNGPSS TLKLSNHSMS 600 SEPGLETAMF SQGATASKSP LSSSSQSSGS STCCSSGAKQ QSTSINALGG MEDPGGPLKS 660 VIGEAKLHAS NQHEMKLLQH QTGGDLRVKA MFGQVKLLFG LQPNWGFIDL QREIAKHFNI 720 EDVDRINLKY LDDDNEWVLL TCDADLEECI DIYKSSQTHT IKISLHQVSN LNLGSSFGYN 780 DPL

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MFFKNMEGDV GFYDDAAVDM DFIDELLFEG FNINSDRGQA GLDLSRSENR AVTSMSRLME  60
AVLYLKESTK GRDDVLIQIW VPVKKGGKHV LTTQGQPYSL NTNCKSLEIF RDVSEAYSFP  120
AEEDSEGPIG LPGRVFLGKL PEWTPDVRFF RRDEYRRVGL AQKYNVGGSF ALPVFEQGSG  180
TCLGVVEIVS CTQKINYRPE LEHVCKALEA VDLRSSHCFT PPNVKGYNEL YRVALPEITE  240
VLRSICKRYE LPLALTWAPS RHSDKNFYCC VSTSGSSCFV ADEGLTGFLE ACSEHQLFRG  300
QGIVGRAFTT NKPCFATDIT AFSKTIYPLS HHARMFGLRA AVAIPLQSAF TESVVFVLEL  360
FLPKDCHDSK AQKRMLNSLS GFMQQACHSL QVIVDKELEE EVILPVKEMF KSNKKETEFR  420
IFSSKEDSPV ESSSWIAHMM EAQQKGKGVS SSWEYKKELD FRQVDHQHAQ TNTVDSGHRD  480
LAEKKAGEKK RKKTEKTIGL QDLRQHFAGS LKDAAKSIGV CPTTLKRICR QHGITRWPSR  540
KIKKVGHSLR KLQVVIESVQ GAEGAIQIGS FYSSFPELSS PICSNNGPSS TLKLSNHSMS  600
SEPGLETAMF SQGATASKSP LSSSSQSSGS STCCSSGAKQ QSTSINALGG MEDPGGPLKS  660
VIGEAKLHAS NQHEMKLLQH QTGGDLRVKA MFGQVKLLFG LQPNWGFIDL QREIAKHFNI  720
EDVDRINLKY LDDDNEWVLL TCDADLEECI DIYKSSQTHT IKISLHQVSN LNLGSSFGYN  780
DPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	488	492	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728211.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A1U8MMZ3	0.0	A0A1U8MMZ3_GOSHI; protein NLP2-like
STRING	Gorai.005G259100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein