PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1753
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 324aa    MW: 35954.7 Da    PI: 6.3662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1753genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.5e-18242275134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Gh_A03G1753 242 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 275
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-755320IPR016679Transcription factor, GATA, plant
SMARTSM004014.2E-14236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13238299No hitNo description
PROSITE profilePS5011411.332240272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14240274IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.87E-13241292No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003209.6E-16242275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MELCMEAKAL KSSVRGEFTK NSHNQNQHVA FDDFFSLNGG VSSEEFSVDC FFYFTNGEFE  60
EENEEKNSAL IFSQEERVTD DDSNSNSSSS YSGLTNELSV PDDEIAGLEW VSQFVDDSFP  120
VLPFSCPVFE QQTENQTQAR FEPESAPVFV KTPCFSSPIP SKSRSKRTKP TGKTWPVGSI  180
PRFESSTSST TTASSSSTSS GFSISSTPTQ KPNLGDTTEP PTKKQRRKSV VQSNGNAFQR  240
RCSHCQVQKT PQWRTGPLGA KTLCNACGVR YKSGRLYPEY RPACSPTFSG DMHSNSHRKV  300
LEMRKKKELA GKEPDELTPV VPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.630.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016714589.10.0PREDICTED: GATA transcription factor 5-like isoform X1
TrEMBLA0A1U8LN260.0A0A1U8LN26_GOSHI; GATA transcription factor
STRINGGorai.005G247900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5