PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1639

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 236aa MW: 26199.1 Da PI: 7.5454

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1639	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.5e-19	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEde l ++v+++G+++W++I+r ++ gR++k+c++rw + Gh_A03G1639 9 KGPWGPEEDESLRKLVQLHGPRNWSLISRSIP-GRSGKSCRLRWCNQ 54 79****************************.*********985 PP
2	Myb_DNA-binding	59	1e-18	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+l+++a++++G++ W+tIar ++ gRt++ +k++w++ Gh_A03G1639 63 PFTAEEDDLIIKAHAKFGNK-WATIARLLN-GRTDNAVKNHWNST 105 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.068	4	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-31	6	102	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-18	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-25	10	62	IPR009057	Homeodomain-like
CDD	cd00167	2.62E-14	11	53	No hit	No description
PROSITE profile	PS51294	21.565	60	110	IPR017930	Myb domain
SMART	SM00717	3.9E-16	60	108	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-23	63	109	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-16	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-12	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDQDIDRVKG PWGPEEDESL RKLVQLHGPR NWSLISRSIP GRSGKSCRLR WCNQLSPEVA 60 HRPFTAEEDD LIIKAHAKFG NKWATIARLL NGRTDNAVKN HWNSTLKRRR SAEDGDSVQE 120 SERRSSKFPR SGSISNPGSP SGSDVSDLGL SVAESTPHSR VSTALTLGRS WSDELVELNN 180 DNSCTDKESG SVAEKHDNGT KTASLGTELL AAMQEMIRKE VRNCMAEFGF HNQCWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-39	8	109	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-38	8	109	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-38	8	109	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	6e-39	8	109	3	104	C-Myb DNA-Binding Domain
1msf_C	6e-39	8	109	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3201	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016723002.1	1e-174	PREDICTED: transcription factor MYB44-like
Refseq	XP_017632931.1	1e-174	PREDICTED: transcription factor MYB44-like
Swissprot	O23160	9e-73	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A1U8M860	1e-173	A0A1U8M860_GOSHI; transcription factor MYB44-like
STRING	Gorai.005G234900.1	1e-172	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-68	myb domain protein 73

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]