PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1528
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 1091aa    MW: 123093 Da    PI: 5.5448
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1528genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1183.91.7e-57201362118
         CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  l+ ++rwl++ ei++iL n++k+++++e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een++fqrr+y
  Gh_A03G1528  20 LEAQHRWLRPAEICEILRNYQKFHISSEPPTGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSY 117
                  5679********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  w+Le++l++iv+vhylevk
  Gh_A03G1528 118 WMLEQDLTHIVFVHYLEVK 136
                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.03615141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038597.0E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.1E-6509607IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.42E-16521607IPR014756Immunoglobulin E-set
PfamPF018336.9E-6521594IPR002909IPT domain
PROSITE profilePS5029718.908703814IPR020683Ankyrin repeat-containing domain
CDDcd002041.29E-14703812No hitNo description
Gene3DG3DSA:1.25.40.201.2E-18706816IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.97E-18706814IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-6725814IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.458753785IPR002110Ankyrin repeat
SMARTSM002480.019753782IPR002110Ankyrin repeat
SMARTSM002481800792821IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8913966IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37915937IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096916945IPR000048IQ motif, EF-hand binding site
PfamPF006120.0017917936IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0038938960IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304939963IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4941960IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MADRASYSLA PRLDIDQILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSASPTSTL  180
TSLCEDADSE DSHQASSRFC TLPQQGNASV MDKIDSVFSN HCSPHQYPGK NYLTILFSST  240
DSVNIFLLYA LHDFAFEPYG NLKLLQYDHE GWSSIPGVNE VSHLHGDRPR DIDYGTCTTE  300
ARRTPDLPSW EQDLGQYLPV YAAASSHTSA TSIQPDTMSI SLQQQNKMKG KLLTVESASP  360
EFGNPLSTES NWQIPSADNA LELPKWLMDS SSNFELPYDT RFFEQKTHDF QLPNALEEIT  420
SHDVLKDDDS DSVMKTYPEN DIYLDGNVSY AFSLKKSLLN GEENLKKVDS FSRWITKELG  480
EVDDLQMQSS SGLAWSTVEC GNVSDDASLS PSLSQDQLFS IVDFSPKWAY IDLETEVLII  540
GTFLKSQEEV AKYNWSCMFG EVEVPAEVIA DGILSCYAPP HNIGQVPFYV SCTNRVACSE  600
VREFDYRAGV TKDINVFDIY GLTSREMLLR LKTLLSLKSF SPCNHHCQGV VEKRELIAKI  660
ISMKEEEECH QFVDPSSDQD LSEYEEKERL LQRLMKEKLY SWLLHKIMED GKGPNILDEK  720
GQGVLHLAAA LGYDWAINPT VSAGVSINFR DVNGWTALHW AAFCGRERTV AILVSVGAAP  780
GALTDPSPEF PLGRTPADLA SANGHKGISG FLAESSLTSY LSSLTMDDQK EAVQTVSDRI  840
ATSVNYNDAQ DILSLKDSIT AVCNATQAAD RIHQMFRMQS FQWKQLRESS DAVSDEHVIS  900
LLTTKTRRPF QSDGVAHAAA TQIQKKFRGW KKRKEFLLIR QRIVKIQAHV RGHQVRKQYK  960
TFVWSVGILE KVILRWRRKG SGLRGFRRDA IIKPDPQCTP PEEDEYDFLK EGRKQTEERF  1020
QKALTRVKSM AQNPEGRGQY RRLLTLVQGI QENKACNMVL NSTEEVAVAD EDFLDVDSLL  1080
DDDTFMSIAF E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.134880.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588102e-77JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667194.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1U8HV090.0A0A1U8HV09_GOSHI; calmodulin-binding transcription activator 2-like isoform X3
STRINGGorai.005G220600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]