PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A03G1376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23534.5 Da PI: 9.9651 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g Gh_A03G1376 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76 69*******.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.8E-40 | 27 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.47E-18 | 27 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.999 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAPQDKNASK ILKKANVTGS TSSQEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAARAYDAA AREFRGPKAK TNFPLPDETN CYKGQNQQSP SQSSTVEESG SPTVERGVNT 120 VTGAVGRFPF ACHQQLALGG GVANGGISGV TQSRPVLFIE ALGGAGVVGQ VYPVRFDPVG 180 VQLGMGFASV VRSEPDSSSA IHCKARRPGL VLDLNLPPPV DA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 27 | 85 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 27 | 85 | 5 | 64 | ATERF1 |
3gcc_A | 2e-21 | 27 | 85 | 5 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.5157 | 0.0 | boll| leaf| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU082108 | 0.0 | EU082108.1 Gossypium barbadense ethylene-responsive element binding protein (EREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016666343.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
TrEMBL | A0A1U8HQV3 | 1e-161 | A0A1U8HQV3_GOSHI; ethylene-responsive transcription factor 9-like | ||||
TrEMBL | A0A2P5XHC7 | 1e-161 | A0A2P5XHC7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G200200.1 | 1e-136 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-38 | erf domain protein 9 |