PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1376
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 222aa    MW: 23534.5 Da    PI: 9.9651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1376genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-212776255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Gh_A03G1376 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 76
                 69*******.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.8E-402790IPR001471AP2/ERF domain
CDDcd000181.47E-182784No hitNo description
Gene3DG3DSA:3.30.730.108.3E-332784IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232785IPR016177DNA-binding domain
PROSITE profilePS5103223.9992784IPR001471AP2/ERF domain
PfamPF008472.0E-142776IPR001471AP2/ERF domain
PRINTSPR003674.4E-112839IPR001471AP2/ERF domain
PRINTSPR003674.4E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPQDKNASK ILKKANVTGS TSSQEVHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDAA AREFRGPKAK TNFPLPDETN CYKGQNQQSP SQSSTVEESG SPTVERGVNT  120
VTGAVGRFPF ACHQQLALGG GVANGGISGV TQSRPVLFIE ALGGAGVVGQ VYPVRFDPVG  180
VQLGMGFASV VRSEPDSSSA IHCKARRPGL VLDLNLPPPV DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-212785261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-212785564ATERF1
3gcc_A2e-212785564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.51570.0boll| leaf| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0821080.0EU082108.1 Gossypium barbadense ethylene-responsive element binding protein (EREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666343.11e-163PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLA0A1U8HQV31e-161A0A1U8HQV3_GOSHI; ethylene-responsive transcription factor 9-like
TrEMBLA0A2P5XHC71e-161A0A2P5XHC7_GOSBA; Uncharacterized protein
STRINGGorai.005G200200.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-38erf domain protein 9