PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1358
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 434aa    MW: 48153.9 Da    PI: 8.4789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1358genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-0578100123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ C+k F r  nL+ H r H
  Gh_A03G1358  78 YICEVCHKGFQRDQNLQLHRRGH 100
                  89*******************88 PP
2zf-C2H213.30.00025154176123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H + +
  Gh_A03G1358 154 WKCDKCSKRYAVQSDWKAHAKIC 176
                  58*****************9987 PP
3zf-C2H211.10.0012184202523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg+ Fsrk+++++H   +
  Gh_A03G1358 184 DCGTIFSRKDSFVTHRAFC 202
                  8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-577100No hitNo description
Gene3DG3DSA:3.30.160.602.1E-577100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03878100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74178100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355240119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-5149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSNFVQDFEE DEHHSTVISQ SSNESPNPIE HPITTSSKKK RNLPGNPGKH AFFFGKFSDP  60
DAEVVALSPR TLMATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRT NTEVKKRVYV  120
CPEPNCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHAKICGTRE  180
YRCDCGTIFS RKDSFVTHRA FCDALTEENY KVNRNHGAIG GSILQKQADE TMSISDNTKM  240
NLSIGNESMD NSQRLLSLKS TGIMNTSSNL DQIFNPTTSL ASTLAMGSAY TSATALLQKA  300
AQMGAKISDN TIAPILFRGF TGYSTSNMNS SDSVHDGSNG AGTNGLYVGE ETSHNPLAPT  360
ALFDSHFLQA ENGKAANLLG QVYMEGGQKL TVDFLGVEPT GHQNVDNERN YDGNIMNLGY  420
SNAQEGLKNL RANW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34150213366Zinc finger protein JACKDAW
5b3h_F3e-34150213366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5826931e-149JX582693.1 Gossypium hirsutum clone NBRI_GE15573 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676346.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A0D2NFT50.0A0A0D2NFT5_GOSRA; Uncharacterized protein
STRINGGorai.005G198100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-108indeterminate(ID)-domain 2