PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1314
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 295aa    MW: 33037.9 Da    PI: 6.9133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1314genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.56e-15217241226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yGd C+FaH+
  Gh_A03G1314 217 KTELCNKWQETGACPYGDHCQFAHS 241
                  9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-18210248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-11212247IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8215242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535215243IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-12217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-11249282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8249283IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605253281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQNDNVSTAY GDLAAGELNH HQNGGVYASS TANSSASLLA LHHPRILMQQ HQDMINRHSL  60
CLSRFREAAK EAESLRQENT SLRSVNRDLN KQLNALIQAS VQDHFASSDY NTAPFDLVNA  120
LEGLCFGGGV GEEEVSDMEG EVDVERVKLP KSISIRSNEY QKMMSKAGAA SHRGKTRGLA  180
QTSNDSQQIR RAKVYVQGGK EEEELLELEV YNQGMLKTEL CNKWQETGAC PYGDHCQFAH  240
SVEELRPVIR HPRYKTEVCR MVLTGDVCSY GHRCHFRHAL TEQEKSVGHL KPQTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-20217282570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610143.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X2
SwissprotQ9C9F56e-80C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2P5XMD20.0A0A2P5XMD2_GOSBA; Uncharacterized protein
STRINGGorai.005G193700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-83C3H family protein