PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A03G1101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 143aa    MW: 16158.5 Da    PI: 10.4331
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A03G1101genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.58.1e-1511911897
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                 + e+P ar+kki+k d+d++++ +ea  l+s + +lf+  l+ r+   a e+k++t+k   + +av+r   + dfl+d  p
  Gh_A03G1101 11 RPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAQVAAEKKKKTVKLDHLRTAVKRHRpTSDFLLDSLP 91
                 5689**************************************************************9975389*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.87E-171393IPR009072Histone-fold
PfamPF008087.9E-191376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.3E-201491IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAEDEAVDPI RPEFPTARVK KIMKLDKDIN KVNSEALFLV SCSTNLFLRF LAERTAQVAA  60
EKKKKTVKLD HLRTAVKRHR PTSDFLLDSL PIPAESTQSV ARFATDRDRS RSVGDKSAPA  120
GTRRIDHFFR KPENEAPIQI NDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016665920.12e-99PREDICTED: DNA polymerase epsilon subunit C-like
TrEMBLA0A1U8HIP04e-98A0A1U8HIP0_GOSHI; DNA polymerase epsilon subunit C-like
STRINGGorai.005G168300.16e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-51nuclear factor Y, subunit C13