PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A03G1033

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 477aa MW: 52412.5 Da PI: 5.5484

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A03G1033	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg s+++ ++ H t+ Gh_A03G1033 124 FECPICGASYRSEEEVSIHVETC 146 89*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	2.63E-20	179	273	No hit	No description
SuperFamily	SSF143503	2.22E-17	190	253	IPR018997	PUB domain
Pfam	PF09409	4.7E-16	191	264	IPR018997	PUB domain
SMART	SM00580	2.5E-19	191	258	IPR018997	PUB domain
SuperFamily	SSF54236	8.01E-12	337	450	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	3.3E-7	366	448	No hit	No description
PROSITE profile	PS50033	10.841	366	450	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MSEMKDKLKG FMKKVNTQFS SSSSSSSSSG KFKGQGRVLG SSSSSGPVNP ILTRPSPIPN 60 PAPSSSSSNS KPVLPSKPPV SDQNKPSSNS NPEPNHKTGS GFDPYDSFIT SSKVSKNGFT 120 INVFECPICG ASYRSEEEVS IHVETCVNNT NSLDRKGTDD ESGSNETALE ESRGEVEVRV 180 SSFLSGKPAE GSIEVVLKLL RNIVKEPGND KFRKLRMSNP KIREAIGEVA GGVELLEFVG 240 FELKEEGGEM WAVMDVPKEE QISVISKAIM LLEPGNMEKF KSENISPAAP PEKEETVESK 300 KIDRKIRVFF SVPESVAAKI ELPDSFYNLS SEELKREAEM RKKKIADSQL LIPKSYKEKQ 360 AKAARRKYRR TIIRIQFPDG VVLQGEFAPW EPTSALYELV SSALKEPCLE FELLDPVIVK 420 RRVIPSFPAA GEKGRTLEDE DLVPSALIKF KPVETDSVVF TGLSNELLEI SEPLVTN

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MSEMKDKLKG FMKKVNTQFS SSSSSSSSSG KFKGQGRVLG SSSSSGPVNP ILTRPSPIPN  60
PAPSSSSSNS KPVLPSKPPV SDQNKPSSNS NPEPNHKTGS GFDPYDSFIT SSKVSKNGFT  120
INVFECPICG ASYRSEEEVS IHVETCVNNT NSLDRKGTDD ESGSNETALE ESRGEVEVRV  180
SSFLSGKPAE GSIEVVLKLL RNIVKEPGND KFRKLRMSNP KIREAIGEVA GGVELLEFVG  240
FELKEEGGEM WAVMDVPKEE QISVISKAIM LLEPGNMEKF KSENISPAAP PEKEETVESK  300
KIDRKIRVFF SVPESVAAKI ELPDSFYNLS SEELKREAEM RKKKIADSQL LIPKSYKEKQ  360
AKAARRKYRR TIIRIQFPDG VVLQGEFAPW EPTSALYELV SSALKEPCLE FELLDPVIVK  420
RRVIPSFPAA GEKGRTLEDE DLVPSALIKF KPVETDSVVF TGLSNELLEI SEPLVTN

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612288.1	0.0	PREDICTED: plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2P5XU57	0.0	A0A2P5XU57_GOSBA; Uncharacterized protein
STRING	EOY01077	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]